Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E13
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    58   3e-10
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    28   0.23 
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   0.41 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   2.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   5.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   6.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    23   8.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    23   8.8  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    23   8.8  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 57.6 bits (133), Expect = 3e-10
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = +1

Query: 97  KTMAVPVQILSRFKNGLKLSNVRFACGNPYSETRKNLVLTSETKVIVQGFSGKQGTFHSQ 276
           KT    +  L RF +  +L N +    + Y +T  NL++ S+TKVI QGF+GKQGTFH+Q
Sbjct: 3   KTQTTLLTSLRRFSSSSQLKNSK----SLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQ 58

Query: 277 QALD 288
            A+D
Sbjct: 59  HAMD 62


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 88  FSNKTMAVPVQILSRFKNGLK-LSNVRFACGNPYS 189
           F NKT  +PV  +SR  NG +  SN   +   P++
Sbjct: 39  FENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 95  IKQWRFQSKFFLGSKMDSNSAMS-DLHVVTLILKLEKT*FSR--VKLKLLYKGSVVNRV 262
           +K+WR  S+F LG+  D N++ S D+  +  I KL      +   +++ LY+   +N+V
Sbjct: 684 LKKWRLTSRFCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEIRELYESYSINKV 742


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  YFSFCRYFFLIKQWRFQSKFFLGSKMDSNSAMSDLHVVT 181
           YF     +F +K  +F+++F+L ++      MSD+ + T
Sbjct: 699 YFFIASAYFSLKNEKFENEFYLLAQDLRRKIMSDVIIKT 737


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 24  GWLCDPVSVVKLFS 65
           GWLCD V    LFS
Sbjct: 199 GWLCDTVGKSSLFS 212


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 127 SRFKNGLKLSNVRFACGNPYSETRKN 204
           SR  + + LSN  FA G+P S+   N
Sbjct: 473 SRHLSHVSLSNPDFAIGSPMSQDSSN 498


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 100 TMAVPVQILSRFKNGLKLSNVRFAC---GNPYSETRKNLVLTSETKVIVQG 243
           T  + VQI    K  LKL N+R  C   G P  +   +L   +E  V   G
Sbjct: 500 TRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPG 550


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 201 FSSF-RIRVTTCKSDIAEFESIFEPRKNL 118
           FS F   R   CK+ + E+E   E RK+L
Sbjct: 436 FSQFYATREERCKNQLREYEKQMEYRKHL 464


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 82  STEGKVLNNLTTLTGSHSQP 23
           +TE K LNNL   T SH  P
Sbjct: 221 TTEIKNLNNLNLTTNSHWYP 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,607
Number of Sequences: 5004
Number of extensions: 19954
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)