Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E13
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...    36   0.007
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    26   4.2  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     26   4.2  
02_02_0031 - 6215098-6215231,6215963-6216122,6217225-6217395,621...    26   5.6  
07_01_0723 + 5524158-5525009                                           25   7.4  
03_05_0765 - 27536666-27536767,27536854-27536976,27537161-275373...    25   7.4  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 223 TKVIVQGFSGKQGTFHSQQALD 288
           T+VI QG +GK GTFH++QA++
Sbjct: 43  TRVICQGITGKNGTFHTEQAIE 64


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 180 VTTCKSDIAEFESIFEPRKNLDWNRHCFIRKKYLQKEK 67
           + TCK        I +P     W+RH   + +Y  K+K
Sbjct: 88  IDTCKITCEVARKIGDPEAPRPWSRHSLKKPEYNSKDK 125


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 182 GLPHANLTLLSLSPFLNRERIWTGTAIVLL 93
           G P  +L     SPF+N++++  G +IV +
Sbjct: 179 GTPRRHLLTTGWSPFVNKKQLTAGDSIVFM 208


>02_02_0031 -
           6215098-6215231,6215963-6216122,6217225-6217395,
           6217556-6217746,6218047-6218287
          Length = 298

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = -2

Query: 275 WLWNVPCLPLNPCTITLVS-LVRTKFFRVSE*GLPHANLTL--LSLSPFLNRERIWTGTA 105
           WLW +  +P  PCT+   S  V     R +  G  H  L L   + SP +     W G  
Sbjct: 196 WLWAMTIMPFLPCTLATGSKSVELLMGRETHHGGHHRLLALSKSTRSPRILLHENWDGPG 255

Query: 104 I 102
           I
Sbjct: 256 I 256


>07_01_0723 + 5524158-5525009
          Length = 283

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 278 CWLWNVPCLPLNPC 237
           CW WN P   L+ C
Sbjct: 23  CWKWNAPAAALSSC 36


>03_05_0765 -
           27536666-27536767,27536854-27536976,27537161-27537355,
           27538144-27538272,27539025-27539066,27539067-27539229,
           27539357-27539492,27539883-27540287,27540419-27540505,
           27540877-27541054
          Length = 519

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 182 GLPHANLTLLSLSPFLNRERIWTGTAIVLLEKNI 81
           G  H + TLLS   FL R    +   + LLEK I
Sbjct: 215 GEAHPSSTLLSTKDFLERPLAGSQVQLCLLEKKI 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,378,339
Number of Sequences: 37544
Number of extensions: 114176
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)