Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E13
(288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 55 9e-09
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 50 2e-07
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 27 2.2
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 27 2.2
AF125452-1|AAD12828.1| 311|Caenorhabditis elegans Hypothetical ... 26 3.8
AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical ... 26 5.0
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF067608-10|AAC17650.1| 261|Caenorhabditis elegans Hypothetical... 25 8.7
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 54.8 bits (126), Expect = 9e-09
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +1
Query: 184 YSETRKNLVLTSETKVIVQGFSGKQGTFHSQQALD 288
Y++TR NL++ TKVIVQGF+G+QGTFHS+Q L+
Sbjct: 22 YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLE 56
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +1
Query: 184 YSETRKNLVLTSETKVIVQGFSGKQGTFHSQQALD 288
Y+ T NL + +TKVIVQGF+GKQGTFH +Q L+
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLE 55
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 275 WLWNVPCLPLNPCTITLVSLVRTKFFRVSE*GL 177
WL NVPC+ N C V + +TK R+++ G+
Sbjct: 941 WLGNVPCVHGNLC-CRKVLISKTKTIRITDYGV 972
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 275 WLWNVPCLPLNPCTITLVSLVRTKFFRVSE*GL 177
WL NVPC+ N C V + +TK R+++ G+
Sbjct: 941 WLGNVPCVHGNLC-CRKVLISKTKTIRITDYGV 972
>AF125452-1|AAD12828.1| 311|Caenorhabditis elegans Hypothetical
protein Y39F10C.1 protein.
Length = 311
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 133 FKNGLKLSNVRFACGNPYSETRKNLVLTSE 222
FK+ L ++ R CGNP+ L+L S+
Sbjct: 171 FKDDLGATSFRVYCGNPFEGRSTKLLLESD 200
>AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical
protein T27A1.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 100 FY*KKISTEGKVLNNLTTLTGSHSQPSCRIHA 5
F+ +++ TEG+++ + + S S+P R HA
Sbjct: 22 FHSRRLGTEGQIVGRILSEYDSSSRPPVRDHA 53
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 49 SSNYLVLFLL*IFFSNKTMAVPVQ--ILSRFKNGLKLSNV 162
S++Y + F + +SN T+ + Q I+SR K+G LSNV
Sbjct: 549 STDYKLHFFQSMGYSNTTLLLLNQKFIVSRIKHGKDLSNV 588
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 49 SSNYLVLFLL*IFFSNKTMAVPVQ--ILSRFKNGLKLSNV 162
S++Y + F + +SN T+ + Q I+SR K+G LSNV
Sbjct: 549 STDYKLHFFQSMGYSNTTLLLLNQKFIVSRIKHGKDLSNV 588
>Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical
protein C49C3.11 protein.
Length = 404
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 32 VRSCQCRQII*YFSFCRYFFL 94
VR C R I F FC+Y FL
Sbjct: 45 VRKCVKRGFICCFKFCKYTFL 65
>AF067608-10|AAC17650.1| 261|Caenorhabditis elegans Hypothetical
protein B0511.3 protein.
Length = 261
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 118 QILSRFKNGLKLSNVR-FACGNPYSETRKNLVLTSETKVI--VQGFSG 252
QIL F+ G KL N+ + CG P +E + +V + + K + GF G
Sbjct: 116 QILPSFQAG-KLENLDLYYCGKPTAEDMETIVNSDQWKNAKNISGFRG 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,573,356
Number of Sequences: 27780
Number of extensions: 112116
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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