Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E12
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.084
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 29 0.34
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 29 0.45
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 0.78
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 1.8
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 4.2
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.3
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 24 9.6
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 24 9.6
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 24 9.6
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.084
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 169 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENN 288
++GH +T NHF+ +GH +T +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.34
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 378 PPFARQLGNIPSTSHTRVYSPLHLLFIGLFVVLR 277
P + R+L S S++R SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 28.7 bits (61), Expect = 0.45
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 311 IYCLLDFLLFSVFTNFVTIFLEC 243
++CL D+ FS+F+ F+ I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.9 bits (59), Expect = 0.78
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 145 NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 306
N + D + H K + +HFDPS + +K+V+ N K S+ Q
Sbjct: 18 NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 130 EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 249
+YD++N DH H H + EA GHS
Sbjct: 21 DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 394 VSAITSSFR*ATR*YSFYKPYSCLFTVTSIVYWTFCC 284
+S + SS R R SFY PY+ T+T +V C
Sbjct: 767 ISGMYSSVRMGQR--SFYAPYTLNLTITEVVKAEVTC 801
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 326 TRVWLVEGILPSCLAKGGRYG 388
T WL EG+ P C+ + ++G
Sbjct: 440 TESWLKEGLRPRCITRDLKWG 460
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 352 YSFYKPYSCLFTVTSIVYWTFCCSPYS 272
+ + P+ CLF +S+ +T +P+S
Sbjct: 467 HEMFNPFYCLFEYSSVDNYTLQINPHS 493
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 71 IKALLNNFLTECSTYESAISFPR 3
+K ++N LTEC T + + F R
Sbjct: 208 LKGVVNKALTECPTIKKVLVFQR 230
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 52 LLSSALIVFCTYNLFTNV------TMSEAFFDEYDYYNFDHDKHIFTGHG 183
LL SALI FC+ ++ T+V + + F + + +FDH F G
Sbjct: 108 LLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAAFHSTG 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,560
Number of Sequences: 5004
Number of extensions: 34154
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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