Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E11
(278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 125 1e-30
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 125 1e-30
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.092
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.37
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 0.86
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 26 1.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 2.0
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 3.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 3.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 3.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 4.6
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 4.6
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 23 6.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 6.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 6.1
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 23 6.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 6.1
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 23 6.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 6.1
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 23 8.0
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 23 8.0
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.0
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 23 8.0
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 125 bits (301), Expect = 1e-30
Identities = 53/80 (66%), Positives = 70/80 (87%)
Frame = +2
Query: 38 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVVKKPVAVHSR 217
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLV++KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 218 ARVRKNTEARRKGRHCGFGK 277
R+RK A+R GRH G+GK
Sbjct: 61 FRIRKTHAAKRLGRHTGYGK 80
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 125 bits (301), Expect = 1e-30
Identities = 53/80 (66%), Positives = 70/80 (87%)
Frame = +2
Query: 38 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVVKKPVAVHSR 217
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLV++KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 218 ARVRKNTEARRKGRHCGFGK 277
R+RK A+R GRH G+GK
Sbjct: 61 FRIRKTHAAKRLGRHTGYGK 80
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.092
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 240 SVFLRTRAREWTATGFLTTRPSLIILRMFC 151
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 0.37
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 160 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 65
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 0.86
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 268 ATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 158
A + SF +R CV N + NW+ + I HLTD
Sbjct: 125 ARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 17 VGSHRAMMSS-LKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 166
VG + + S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 308 VGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 2.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 152 QNIRKMIKDGLVVKKPVAVHSRARVRKNTEARRKGRHCG 268
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 24.6 bits (51), Expect = 2.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +2
Query: 98 KVWLDPNEINEIANTNSRQNIRKMIKDGLVVKK-----------PVAVHSRARVRKNTEA 244
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 245 RRKGR 259
R+ R
Sbjct: 349 RKSLR 353
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +2
Query: 140 TNSRQNIRKMIKDGLVVKKPVAVHSRARVRKNT 238
T S ++ +IK+ +KP ++++++KN+
Sbjct: 912 TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 3.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +2
Query: 20 GSHRAMMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 133
G + K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 50 KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 181
+L +RLAA + RC ++ W D + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.8 bits (49), Expect = 4.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 248 CAPLCFCEHER 216
C P+CFC +E+
Sbjct: 1236 CCPVCFCPYEK 1246
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 4.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 193 LDDQTILDHLTDVLSGISISD 131
LDDQ LD+ D++S IS+SD
Sbjct: 11 LDDQ--LDYQVDLVSEISVSD 29
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 202 NWFLDDQTILDHLTDVLSGISISDFIDL 119
NW ++ + + VL GI DFI L
Sbjct: 146 NWLFENTRTVSNHNSVLHGIKPIDFISL 173
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 144 LVLAISLISFGSSHTFF 94
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 144 LVLAISLISFGSSHTFF 94
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 54 YRRGLQPLLCDAVK 95
Y+RG QPLL D V+
Sbjct: 194 YKRGFQPLLPDVVQ 207
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 144 LVLAISLISFGSSHTFF 94
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 150 LELVLAISLISFGSSHTFFLPHRITE 73
+ +V A LI TFFL H+I E
Sbjct: 308 MNIVAAALLIHCTEEQTFFLMHKICE 333
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 144 LVLAISLISFGSSHTFF 94
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 10 HEGWISPCH 36
HEGW S CH
Sbjct: 70 HEGWESACH 78
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 184 QTILDHLTDVLSGISISDFIDLVWIKPHLFFTASHNRGC 68
+TI+DHL D L ++IS + V + L+ R C
Sbjct: 405 ETIIDHLYDSLRLLAISVTMKYVRNQTILYVNLHDKRKC 443
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 104 WLDPNEINEIANTNSRQNIRKMIKDGLVV 190
+LDP+ N++ N N R ++ + K + V
Sbjct: 77 FLDPDSQNQLWNVNFRNLLKSLSKSNVSV 105
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 192 LTTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASL 61
L+ + L ILR+FCL LA + ++ + + R +E+ L
Sbjct: 347 LSPKRDLYILRVFCLAEQLADAALNTNIENMYNPTERRSESVEL 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,174
Number of Sequences: 5004
Number of extensions: 20317
Number of successful extensions: 75
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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