Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E10
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   0.80 
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   1.1  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   3.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   4.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    23   4.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    23   5.6  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    23   7.5  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    22   9.9  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 26  VNNIIQRFSYKLIYTY 73
           VNN+ QR+   LIYTY
Sbjct: 106 VNNLTQRYEKDLIYTY 121


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 35  IIQRFSYKLIYTYLL*GKANETKFVH*----RYLRKNTRRSFRVDYSTYFHSLNFFV 193
           +++ FS  ++  Y L    N+    H     ++L +  RRS RVDY+T   +L +F+
Sbjct: 9   LLESFSTVILSIYPLAKSTNQQSHSHSLSLTQFLYETIRRS-RVDYTTLLLALYYFI 64


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 NLYIEDI*EKILGGAS 149
           NLYI  +  KILGGAS
Sbjct: 180 NLYISALQAKILGGAS 195


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 165  HISIV*IFLSVCLFISLFPEPV 230
            HI  +  FL    F+SLFPEPV
Sbjct: 2006 HIEAILTFL--IKFLSLFPEPV 2025


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 175 MEICTVVDSEAPPSIFS*ISSMY 107
           ++ICT+    A PS++  +SS Y
Sbjct: 498 IQICTLGTGSAMPSLYRNVSSTY 520


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  DKNK*VNNIIQRFSYKLIYTYL 76
           +  K +NNI +   Y LI TYL
Sbjct: 328 ESQKWINNITKDMKYYLIATYL 349


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 132 ILGGASESTTVHISIV*IFLSVCLFISLFPEPV 230
           I  G+  S      I+ + + +C FISLF  P+
Sbjct: 393 IESGSGISAGGRTGILGMVVGICFFISLFFAPI 425


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 241 NLTETGSGNKLINRHTDKKI*TMEICTVVDSEAPPSIFS*ISSMY 107
           N TE     + +NR TD  +    +  ++ ++  P IF     MY
Sbjct: 307 NFTENHDVPRFLNRSTDYSLLCNTLTLLLFTDGIPIIFQGQEQMY 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 803,067
Number of Sequences: 5004
Number of extensions: 12184
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)