Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E10
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    25   6.4  
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211...    25   8.5  

>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 22  ISK*YYSKIFLQVNLYLLTIR*G*RDE 102
           + K Y  K++LQ NLY+ T+    RDE
Sbjct: 586 LRKKYIYKVYLQGNLYICTVYLKTRDE 612


>05_01_0273 +
           2115257-2115589,2115706-2115766,2115876-2115970,
           2116072-2116184,2116278-2116551,2116923-2117036,
           2117169-2117233,2117325-2117466,2117547-2117666,
           2118153-2118241,2118349-2118433
          Length = 496

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 227 WFREQTNKQTHRQKNLNYGNMYCSRL 150
           W   Q  +   ++  LNY N  C RL
Sbjct: 379 WIENQLRENKTKELILNYANQLCERL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,530,708
Number of Sequences: 37544
Number of extensions: 59164
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)