Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E10
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    26   3.1  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    26   4.1  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 126 LKYLQCTNFVSLALPYS 76
           +KY+ C N  SL +PYS
Sbjct: 353 IKYIDCLNISSLEMPYS 369


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 119 YLRKNTRRSFRVDYSTYFHSLNFFVCVSVY*FVP*TS 229
           +L  NT +  RV + T    LNF + + +  ++P TS
Sbjct: 219 HLSSNTSKVTRVMFQTLIKGLNFQILLPMISYIPTTS 255


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 158 YSTYFHSLNFFVCVSVY*FVP*TSF 232
           +S   H+LN+F+CV ++ F   T F
Sbjct: 34  FSIPLHTLNYFLCVIIFYFFVFTIF 58


>Z50044-3|CAA90355.1|  389|Caenorhabditis elegans Hypothetical
           protein F22B5.3 protein.
          Length = 389

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 156 TTVHISIV*IFLSVCLFISLF 218
           ++ HIS+V +FL + +F+++F
Sbjct: 349 SSFHISVVTVFLGLTVFVAIF 369


>U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical
           protein ZC487.1a protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 233 RNWFREQTNKQTHRQKN 183
           +NWFR Q N   HR ++
Sbjct: 143 KNWFRFQRNSSVHRNEH 159


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 55  QVNLYLLTIR*G*RDEICTLKI-FKKKY*AELQSR 156
           +VNLY +T +    DE+ + KI F KK+ +E Q++
Sbjct: 123 EVNLYKITKKWNKNDELLSPKIYFYKKFDSENQTK 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,327,067
Number of Sequences: 27780
Number of extensions: 64768
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)