Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E09
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.026
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.061
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.43
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 28 0.75
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.75
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 1.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 1.7
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 5.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.0
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 9.3
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 9.3
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 24 9.3
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 32.7 bits (71), Expect = 0.026
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = -1
Query: 347 SMRRCRLPLIT*PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPGNSARPKSLCPS 168
+++ C I+ + SY S S ++G R S+ + ++ +P +S+ S PS
Sbjct: 107 TLQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPS 166
Query: 167 AGPTRGVGPYASDANSSS 114
+ ++ S ++SSS
Sbjct: 167 SSSSKSSSSSKSSSSSSS 184
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.5 bits (68), Expect = 0.061
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 353 TASMRRCRLPLIT*PTASYEAISSDVSPISPLLGMRFP--SATYAAMAAPSPGNSARPKS 180
TAS R T S A+S V+P P + R P SAT + P P ++A P S
Sbjct: 1025 TASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSS 1084
Query: 179 LCPSAGPTRGVGPYASDANSSS 114
S P +S A S+S
Sbjct: 1085 SAVSRPPIATSAGRSSTAASTS 1106
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.3 bits (65), Expect = 0.14
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -1
Query: 320 IT*PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPGNS--ARPKSLCPSAGPTRG 150
I+ P+A Y SS ++ +SP+ G +A YA+ + + G+S + P S P RG
Sbjct: 254 ISVPSAPYGRASSTIAEVSPMYGSH--AAPYASTPSAAVGSSRGSTPASATVPISPARG 310
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.43
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = -1
Query: 353 TASMRRCRLPLIT*PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSP---GNSARPK 183
++S+ L T TA+ +ISS VS +PL +A +A A S S+
Sbjct: 224 SSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLP 283
Query: 182 SLCPSAGPTRGVGPYASDANSSSLFDFIELKASTSCS 72
S PS+ P + + SS+ + +TS S
Sbjct: 284 SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS 320
Score = 26.2 bits (55), Expect = 2.3
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 311 PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPG-NSARPKSLCPSAGPTRGVGPYA 135
P S + S+ + +PL ++T + APS +S P S S + A
Sbjct: 488 PLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTA 547
Query: 134 SDANSSSLFDFIELKASTSCSFPF 63
+ A+S+ L A+++ S PF
Sbjct: 548 TSASSTPLTSVNSTTATSASSTPF 571
Score = 25.8 bits (54), Expect = 3.0
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -1
Query: 311 PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPG-NSARPKSLCPSAGPTRGVGPYA 135
P S + S+ + +PL ++T + APS +S P S S + A
Sbjct: 374 PLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTA 433
Query: 134 SDANSSSLFDFIELKASTSCSFPFST 57
+ A+S+ L A+++ S P S+
Sbjct: 434 TSASSTPLSSVNSTTATSASSTPLSS 459
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 0.75
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 61 EKGKEHE-VEALSSIKSKSEDELASEAYGPTP 153
+K KEHE ++AL S S++ D LAS Y P P
Sbjct: 433 KKEKEHEEIKALFSEVSRTLDSLASWHYVPPP 464
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.75
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -1
Query: 308 TASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPGNSARPKSLCPSAGPTRGVGPYASD 129
++S + SS + S S++ ++ ++P+ +S S S+ PT +S
Sbjct: 251 SSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSS 310
Query: 128 ANSSSLFDFIELKASTSCSFPFST 57
++SSS F +S S S FS+
Sbjct: 311 SSSSSSFSSTLSSSSMSSSSSFSS 334
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 310 GYVMSGSRHRRMEAVRIRKENQIY-SADEKRALAAFSKEER 429
G V S S+ R+ +A K + +Y SADE+ L FSK +R
Sbjct: 253 GKVPSYSKLRKNKAFSSAKVSDMYLSADERNRLEDFSKGDR 293
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 218 AAPSPGNSARPKSLCPSAGPTRGVGPYASDANSSSL 111
A P P A PK+ PSA PT + P A ++++
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAI 1916
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 5.3
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 332 RLPLIT*PTASYEAISSDVSPISPLLGMRFPSATYAAMAAPSPGNSARPKSLCPSA 165
R L + P SY+ IS VS + +LGM P Y A P + +++ PS+
Sbjct: 297 RNSLTSEPVLSYQWISF-VSLLQAILGMGIPFPFYDAETRTVPPTNIIIENILPSS 351
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 311 PTASYEAISSDVSPISPLLGMRFP 240
P SYE+I +D + LL M FP
Sbjct: 780 PPQSYESIQNDNELLQELLSMGFP 803
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 222 HGGSLARQQRATEVLVSQRWAHTRRG 145
H ++A+QQRA E +++ W +RG
Sbjct: 781 HAYNVAKQQRAYEEEINRIWNAQKRG 806
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -1
Query: 239 SATYAAMAAPSPGNSARPKSLCPSAGPTRGVGPYASDANSSSLFDFIELKASTSCS 72
S+T ++ ++ SP +S+ + PS+ + +S ++SSS +S+S S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 275 SPISPLLGMRFPSATYAAMAAPSPGNSARPKSLCPSA 165
+PI+P L P+A AAP+P + P P A
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVA 489
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 382 SADEKRALAAFSKEER 429
+ADEKR LA SKE+R
Sbjct: 221 TADEKRKLAQESKEDR 236
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 271 GLTSDEIA--SYEAVGYVMSGSRHRRME 348
G + DE+A SYEA+ Y+M+ ++ R+ E
Sbjct: 9 GASMDELAGKSYEALLYLMNKNKKRKPE 36
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 263 PLLGMRFPSATYAAMAAPSPGNSARPKS 180
P+ SA +A A+P NS+RP+S
Sbjct: 279 PMFTSNVTSAQPSARASPVQSNSSRPRS 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,709
Number of Sequences: 5004
Number of extensions: 24967
Number of successful extensions: 118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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