Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E09
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.1  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   8.1  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   8.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 209 SPGNSARPKSLCPSAGPTRGVGPYASDA 126
           SP +S    S  P+A  T  + PY S A
Sbjct: 68  SPQHSGSSASTSPAARTTSSMYPYVSAA 95


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 325 GSRHRRMEAVRIRKENQIYSADEKRALAAFSKEERAK 435
           G R RR++     K     S +EKR   AFS E+ A+
Sbjct: 1   GPRTRRVKRSHNGKNG---SPEEKRPRTAFSAEQLAR 34


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 14 GKVLAVSQVPKRKYGLKKE 70
          G+VLA S  P+ K  LKKE
Sbjct: 22 GQVLAGSSSPRPKPLLKKE 40


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 27  EKHLRERTSRRRYSRSREREQKSYKNERE 55


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 275 EKHLRERTSRRRYSRSREREQKSYKNERE 303


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 243 EAHPQERGDRAHVGRDRLVRSRGLRDERQ 329
           E H +ER  R    R R    +  ++ER+
Sbjct: 276 EKHLRERTSRRRYSRSREREQKSYKNERE 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,126
Number of Sequences: 438
Number of extensions: 2141
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)