Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E07
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    29   0.18 
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    23   6.9  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    23   6.9  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   9.1  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    23   9.1  

>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 163 NAWNENGSGCDCENGRASSWSRSVSGTATDPG---CGCASTNASATSNGT 23
           +++N NG+  +C +   +SW+ S +     P    C  A  N   ++NGT
Sbjct: 339 HSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLKCSANGT 388


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 208 CTA*NMQLSAKGVWECAG---ARPYAGRGW 288
           C    ++ +A G+W+C+G   ++  AG  W
Sbjct: 42  CGRLTVKRTAAGIWKCSGKGCSKTLAGGAW 71


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 124 NGRASSWSRSVSGTATDPGCGCASTN 47
           NGR S    +   T TDP   C + N
Sbjct: 179 NGRVSPIQEAQMTTVTDPNVHCITVN 204


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 190 WYSHTTQ*FNAWNENGSGCDCENGRASSWSRSVSGT 83
           ++ H T  + A N+NG    C+N    + S++V  +
Sbjct: 240 YHPHHTNLYIAVNDNGIAFICDNRLQQTCSKTVKAS 275


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 145 GSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSN 29
           G+ CDCE+ R  S+ +   G A     G     ASA +N
Sbjct: 121 GNKCDCEDQRQVSFEQ---GQALADELGVKFLEASAKTN 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 860,683
Number of Sequences: 5004
Number of extensions: 13904
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)