Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E07
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0233 + 1833473-1833814,1833910-1834045,1834820-1834953,183... 28 1.4
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 27 2.5
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160 27 2.5
11_06_0659 - 25976268-25976419,25976486-25976675,25981350-259819... 27 3.3
10_04_0009 + 7477914-7478411 27 3.3
02_02_0610 - 12113162-12113965 27 3.3
01_03_0051 - 11985456-11985803 26 4.4
10_08_0062 + 14586613-14586966 26 5.8
10_06_0159 + 11327059-11327285,11327920-11328142 26 5.8
07_03_0013 + 12424972-12425268 26 5.8
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 26 5.8
06_02_0332 - 14558615-14558884 26 5.8
02_04_0293 + 21644415-21644533,21644686-21645118 26 5.8
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 5.8
01_05_0583 + 23420160-23420480 26 5.8
12_02_1237 + 27245411-27245842 25 7.7
10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821... 25 7.7
07_01_0615 + 4551557-4551835 25 7.7
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 25 7.7
02_05_0296 + 27639981-27640766 25 7.7
>03_01_0233 +
1833473-1833814,1833910-1834045,1834820-1834953,
1835379-1835484,1836339-1836424,1836816-1837004,
1837131-1837322,1837407-1837520,1837614-1837910
Length = 531
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 290 PHPLPAYGLAPAHSHTPLAESCMFYAVQHFRSLLVLSH 177
P P PA P H +P+ E+C + +LV +H
Sbjct: 349 PAPAPAPAPQPQHPLSPMGEACSRMDMTAIHQILVATH 386
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 145 GSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSN 29
G G E G ASS S S SG +T A+ +ASA+S+
Sbjct: 8 GGGGGGEAGAASS-SSSSSGPSTSSAAAAATASASASSS 45
>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
Length = 200
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 145 GSGCDCENGRASSWSRSVSGTATDPGCGCAST-NASATSNGTCVC 14
GSGC E S +SG AT P C S + S+ C+C
Sbjct: 44 GSGCMPELVSLSPCMGYMSGNATAPAAACCSALSGVLRSSPRCLC 88
>11_06_0659 -
25976268-25976419,25976486-25976675,25981350-25981967,
25982021-25982248,25982557-25982763
Length = 464
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -2
Query: 283 PSPHTASLQRTPTRP*LKAACFMLCSTSGHYWYSHTTQ*FN--AWNENGSGCDCENGRAS 110
P+ + S + T T L +C C+ + YS +T + + + GR
Sbjct: 377 PTYMSVSTRTTATNEVLDRSC---CADNHARCYSDSTLILSERVAHSKSATATVGGGRGR 433
Query: 109 SWSRSVSGTATDPGCGCASTNASATSNGT 23
+ GT G CA T A+ TSN T
Sbjct: 434 RELAVIDGTLRRKGSPCACTTATTTSNST 462
>10_04_0009 + 7477914-7478411
Length = 165
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 233 QLRACGSALERGRMRGGG 286
QL+ G ERGR RGGG
Sbjct: 148 QLKTAGGTGERGRRRGGG 165
>02_02_0610 - 12113162-12113965
Length = 267
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 145 GSGCDCENGRASSWSRS-VSGTATDPGCGCASTNASATSNGTCVCG 11
G G + E+ + + ++ V+ TA G G ++ SAT+N V G
Sbjct: 203 GKGANKEHKKGGAMPKNEVAATAPTAGAGGEDSDDSATTNAVAVAG 248
>01_03_0051 - 11985456-11985803
Length = 115
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 163 NAWNENGSGCDCENGRASSWSR 98
+AW+ +G GCD +NGR WS+
Sbjct: 32 SAWSRSG-GCDAQNGR---WSK 49
>10_08_0062 + 14586613-14586966
Length = 117
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -2
Query: 145 GSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSNG 26
G+GC +G + G G GCAS A +G
Sbjct: 30 GAGCGGGDGAEAEAEADAGGGGAAEGGGCASAGDGAAGSG 69
>10_06_0159 + 11327059-11327285,11327920-11328142
Length = 149
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -2
Query: 139 GCDCENGRASSWSRSVSGTATDPGCGCAS 53
GC C G S W+ + + GC C +
Sbjct: 97 GCSCRQGFDSRWAERRAQSGGGGGCRCCA 125
>07_03_0013 + 12424972-12425268
Length = 98
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 160 AWNENGSGCDCENGRASS 107
AW+ +G GCD +NGR S+
Sbjct: 25 AWSRSG-GCDAQNGRWST 41
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 148 NGSGCDCENGRAS-SWSRSVSGTATDPGCGCASTNASATSNGTCVCG 11
+G G G +S SWS + S T T G G +S +S+TS T G
Sbjct: 429 SGIGVASNAGSSSGSWSNAGSNTGTLSGAG-SSNWSSSTSGSTSSSG 474
>06_02_0332 - 14558615-14558884
Length = 89
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 160 AWNENGSGCDCENGRASS 107
AW+ +G GCD +NGR S+
Sbjct: 16 AWSRSG-GCDAQNGRWST 32
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Frame = +2
Query: 212 QHKTCS------FQLRACGSALERGRMRGGGG 289
QH+ CS R C L GR RGGGG
Sbjct: 38 QHRYCSELYPRVAAYRRCNWCLREGRRRGGGG 69
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Frame = -2
Query: 145 GSGCDCENGRASSWSRSVSGT--------ATDPGCGCASTNAS-ATSNGTCVC 14
GS C C NG V T AT+ G G AS + NG+C C
Sbjct: 11 GSSCQCGNGCGGCKYSEVEPTTTTTFLADATNKGSGAASGGSEMGAENGSCGC 63
>01_05_0583 + 23420160-23420480
Length = 106
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 160 AWNENGSGCDCENGRASS 107
AW+ +G GCD +NGR S+
Sbjct: 33 AWSRSG-GCDAQNGRWST 49
>12_02_1237 + 27245411-27245842
Length = 143
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 148 NGSGCDCENGRASSWSRSVSGTATDPGCGCASTNASATSNGTC 20
NG C S+SRS +G A G G S + S TC
Sbjct: 101 NGKKLTCPKKCFVSFSRSGNGYAAGGGGGGCSFDCSTKCEATC 143
>10_08_0802 +
20680685-20681059,20681218-20681353,20682047-20682180,
20682722-20682827,20683227-20683312,20683648-20683836,
20684349-20684522,20684638-20684751,20684887-20685141
Length = 522
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 290 PHPLPAYGLAPAHSHTPLAESCMFYAVQHFRSLLVLSH 177
P +P AP H +P+ E+C + +LV +H
Sbjct: 354 PEEVPKAPPAPQHPLSPMGEACSRMDLTAIHQILVSTH 391
>07_01_0615 + 4551557-4551835
Length = 92
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = -2
Query: 157 WNENGSGCDC--ENGRASSWSRSVSGTATDPGCGCASTNASATSNGTCVCGRL 5
W SG D E+ R ++ + + + C C + G C C L
Sbjct: 29 WLTRSSGRDAHDESSRVAATAEAADRPSAAGACSCCCLRTGSRQPGACCCSPL 81
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 121 GRASSWSRSVSGTATDPGCGCASTNAS 41
G+ S S S + T GCGCA+ A+
Sbjct: 44 GKGGSASASAAAGWTGVGCGCAARRAA 70
>02_05_0296 + 27639981-27640766
Length = 261
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 121 GRASSWSRSVSGTATDPGCGCASTNASATS 32
G AS S S G T PG AST +A+S
Sbjct: 28 GPASPHSPSEQGDKTAPGAATASTMTTASS 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,621,632
Number of Sequences: 37544
Number of extensions: 123597
Number of successful extensions: 525
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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