Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E05
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   1.3  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   1.7  
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    26   1.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   3.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   3.0  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   6.9  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 294 GDQDPRADPRGLGAGPARIHTG 359
           GD DPR  P G+G  P     G
Sbjct: 317 GDTDPRTYPAGMGPNPTAARNG 338


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 205 KYLPSSKYNTLTRPKVEAT 261
           +YLPS  YN   RPK+  T
Sbjct: 71  EYLPSGYYNATDRPKIHFT 89


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 45  MHKTQEVYMLLEKYRIGNLHDNDVVDHSDDELWVKEPIRDKRLIVKTAK 191
           ++  Q + + L+   +G  ++   ++    ELW K+PI  KRL+++  K
Sbjct: 124 VYNVQTILLSLQSL-LGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYK 171


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 90   IGNLHDNDVVDHSDDELWVKEPIR 161
            +GN+ DNDV + SD+E  V   I+
Sbjct: 1492 VGNVADNDVQNSSDEENQVPNGIK 1515


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 165 KRLIVKTAKPFNAEIPAKLQIQH 233
           KRL ++  KP   ++P K  IQH
Sbjct: 845 KRLSMENEKPDTTKVPLKYNIQH 867


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 108 NDVVDHSDDELWVKEPIRDKRLI--VKTAKPFN 200
           N++V++     WV + IRDKR    +K A+ +N
Sbjct: 420 NEMVENVMSTHWVPQNIRDKRFANWLKNARDWN 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,362
Number of Sequences: 5004
Number of extensions: 27760
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)