Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E04
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   0.34 
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   0.79 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   2.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   3.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    24   3.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   3.2  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   4.2  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    23   4.2  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    23   5.6  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    23   7.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    23   7.4  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    22   9.7  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    22   9.7  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 125 NAYNSLHPINAIYAFSDSTVALSWIHSSPHRWSIF 21
           + Y  LHP    +   DS +  SWIH +PH   +F
Sbjct: 75  HGYWKLHPHP--HHQHDSIIPASWIHDTPHMKLVF 107


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 152 LSKLVKT-VYNAYNSLHPINAIYAFSDSTVALSWIHSSPHRWSIFVGNR 9
           + +LVK  V   +NSL+  N + AF++      WI SSP  W   VG +
Sbjct: 352 VERLVKEHVTKVFNSLNSKNKL-AFNNMHSGSWWI-SSPDHWHYDVGKK 398


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -3

Query: 164 AALVLSKLVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSPHRW 30
           +AL+ + ++   Y+A+    P+  I+     T+ L  I++   +W
Sbjct: 287 SALIAASIISVEYHAFVCQGPLRFIFIAFTGTLGLIGIYTPWKKW 331


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -3

Query: 104 PINAIYAFSDSTVALSWIHSSPH 36
           P+N+ Y + +    + W + +PH
Sbjct: 358 PVNSFYDWHNGATQVKWNYKNPH 380


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 98  NAIYAFSDSTVALSWIHSSPHRWSI 24
           +A  +FSDS +  S IH     WS+
Sbjct: 683 SAANSFSDSDLVDSMIHGPQQHWSL 707


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 101 INAIYAFSDSTVALSW 54
           ++A YAFS  T+++SW
Sbjct: 591 LHADYAFSHKTISVSW 606


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 149 SKLVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSPHRWSIFVGNRPR 3
           SK  K + N  N  +P N I ++  S    + I  S    SIFV  R R
Sbjct: 270 SKKTKNI-NDENFPNPFNVISSYETSASPSTVIDQSSQVSSIFVNKRLR 317


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 62  LSWIHSSPHRWS 27
           + W+H + HRWS
Sbjct: 229 IHWLHGNLHRWS 240


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 170 LCAALVLSK--LVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSPHRWSIFVG 15
           LC AL  S   LVKT   +Y+   P+   Y +     A S I        +FVG
Sbjct: 140 LCGALFGSPFFLVKTRMQSYSPKFPVGQQYGYKHIFNAFSRIIKENGVKGLFVG 193


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 92  IYAFSDSTVALSWIHSSP 39
           +YA  DS V   W+ S P
Sbjct: 155 VYADKDSEVPTDWVDSDP 172


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 152 LSKLVKTV-YNAYNSLHPINAIYAFSDSTVALSWIHSSPHR 33
           LS  VK V Y AYN + P     A  D+TV +     +P R
Sbjct: 466 LSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDNPRR 506


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 113 SLHPINAIYAFSDSTVALSWIHSSPHRWSIFV 18
           S+  I+ +Y+FS  ++  S +H S    S+FV
Sbjct: 342 SVMNIHPLYSFSSKSLESSKLHYSSSGNSLFV 373


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 158 LVLSKLVKTVYNAYNSLHPINAIYAFSDSTVALSWIH 48
           LVLSK+ K   N Y     + A Y  S   +A ++IH
Sbjct: 82  LVLSKITKNRPNVYIEYLYLFARYFGSGVILATAFIH 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,776
Number of Sequences: 5004
Number of extensions: 10590
Number of successful extensions: 30
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)