Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E04
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0674 - 5502275-5502954,5503054-5504746                           27   1.6  
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906...    26   4.9  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    25   8.5  

>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 118 ITHFIL*MLYTPFLIRQ--LLCHGFILHHTDG 29
           IT F L ML   FLI Q  L C G  LHHT G
Sbjct: 485 ITGFGLLMLLLLFLIWQNKLKCCGMPLHHTQG 516


>02_05_1228 +
           35086576-35087139,35089125-35089268,35090436-35090600,
           35090722-35090796,35091468-35091671
          Length = 383

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 176 LELCAALVLSKLVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSPHRWSIFVG 15
           LE    L    LV       N L PI +    S + +A++W  S+P+  S+  G
Sbjct: 232 LENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVSSVITG 285


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  FSDSTVALSWIHSSPHRWSIFVGNR 9
           FS+S     W H+ P R  ++V NR
Sbjct: 51  FSNSLYVGVWFHNIPQRTVVWVANR 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,549,843
Number of Sequences: 37544
Number of extensions: 61247
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)