Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E04
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    29   0.46 
AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    28   1.1  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    25   9.8  

>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 179 RLELCAALVLSKLVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSP 39
           R+ L  A  L K++      +  LHP N +  F+D+   L  +H +P
Sbjct: 382 RIALLGARALLKMIFVDNFVHGDLHPGNILIRFNDNEDNLRGVHKAP 428


>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 144 ISKNCLQRL*LTSSYKCYIRLF*FDSCSVMDSFFTTQM 31
           ISKN         +YKCY+R   +DS S+ D F  T M
Sbjct: 458 ISKNYYLNKSAKEAYKCYLRA--YDSHSLKDIFDVTNM 493


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 188 TLARLELCAALVLS-KLVKTVYNAYNSLHPINAIYAFSDSTVALSWIHSSP 39
           T+ +LE+ A  V + + + T+    +    +  +  FSDS + L+W+ S P
Sbjct: 552 TIPKLEVQALKVATDRALSTLTALQDGDIKVTKVILFSDSEITLAWLRSEP 602


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -3

Query: 134 TVYNAYNSLHPINAIYAFSDSTVALSWIHSSP 39
           +V++   +L+ + +IY FSD+++ L  I S+P
Sbjct: 309 SVHSVTENLY-LTSIYKFSDTSIILGGIASTP 339


>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 104 PINAIYAFSDSTVALSWIHSSPHRWSIFVGNRPR 3
           P+N+ Y  +   V   W +++P RW    G  PR
Sbjct: 493 PVNSPYGSAPFIV--KWAYATPRRWDGSGGEPPR 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,050
Number of Sequences: 27780
Number of extensions: 59251
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)