Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E03
(214 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 27 0.34
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 2.4
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 4.2
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 23 4.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 23 5.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 23 7.3
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 23 7.3
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 23 7.3
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 23 7.3
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 23 7.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 23 7.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 23 7.3
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 22 9.6
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 22 9.6
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 22 9.6
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 22 9.6
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 0.34
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 100 FCPKNSVLLLLEKMANDPERFDSMLL 177
+C KN +LLEK+ N+P+R + L+
Sbjct: 119 YCQKNLHKVLLEKVRNEPDRLVTDLM 144
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 46 CYKSSCAPIRLCASYLSLFCPK 111
CY S+C+ RLC S+ CP+
Sbjct: 377 CYSSTCSRNRLC---YSISCPR 395
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = +2
Query: 26 WSVSRLFVIRAPVLLYDCVPLIYHYFVPKTVXXXXXXXWQMIRKDLIQCYLLW 184
W ++ + V+L + +YH+ K V +I L C+L W
Sbjct: 42 WKIACTLLCSITVILAYRMCAVYHHVGYKDVSTFGLAYGFLIMMSLRTCFLSW 94
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 197 SCCCAIASNIESNL 156
SC CAIA NI S L
Sbjct: 156 SCLCAIAENISSLL 169
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 40 IICYKSSCAPIRL 78
IICY +S +PIR+
Sbjct: 514 IICYDASASPIRM 526
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 175 VTLNQIFPDHLPFFLVIIIHCFWDKIMINKRHT 77
VT + D LP F HCFW + M + R +
Sbjct: 685 VTPEYLRTDVLPEFF----HCFWSRRMASDRRS 713
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 75 SYRSTGALITNNLLTLQYPDVKSS 4
SY+S ++ NL +L PD KS+
Sbjct: 424 SYKSLVPILYENLDSLDEPDAKSA 447
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 52 KSSCAPIRLCASYLSLFCPKNSVLLLLEKMANDPERFDS 168
K AP++ L++ K V + E NDP +F S
Sbjct: 216 KVKTAPLKWGEDELTIMSKKEYVDMKAELHKNDPPKFSS 254
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 158 LSGSFAIFSSNNNTLFLGQNNDK 90
LS IF +++ F G NND+
Sbjct: 205 LSKGIVIFPNSSECAFYGNNNDE 227
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 194 CCCAIASNIESNLSGSFAI 138
CC I N ++ ++G+F I
Sbjct: 335 CCVVIGENGDNTITGAFVI 353
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 55 SSCAPIRLCASYLSLFCPKNSVL 123
S+ I LCA+YL + +N+VL
Sbjct: 82 STIVHIALCAAYLIVIDSRNTVL 104
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 35 SRLFVIRAPVLLYDCVPLIYHY 100
+RL ++R P L+ C+ I Y
Sbjct: 753 NRLTLLRVPTLIVSCINFIESY 774
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 72 YRSTGALITNNLLTLQYPD 16
Y STGA+ L QYP+
Sbjct: 117 YNSTGAIGVEEALQRQYPE 135
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 90 IRGTQSYRSTGALITNNLLTLQYPDVKS 7
I T+S L+TN LLTL Y D S
Sbjct: 172 ISSTKSRIRIVTLLTNFLLTLLYADPDS 199
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 212 SFTPPSCCCAIASNIESNLSGSFAIFSSNNNT 117
S TPP + I SN+S S S +N++
Sbjct: 143 STTPPPSSASAPFPINSNISNSLDSVSQHNSS 174
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/22 (36%), Positives = 9/22 (40%)
Frame = +1
Query: 43 ICYKSSCAPIRLCASYLSLFCP 108
+C C PI Y FCP
Sbjct: 171 VCTHLGCVPIGEAGDYGGWFCP 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,241
Number of Sequences: 5004
Number of extensions: 15109
Number of successful extensions: 40
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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