Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E03
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0412 - 18799217-18801061 31 0.17
02_03_0148 - 15741241-15741376,15742155-15742237,15742313-157423... 27 1.6
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 27 2.1
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 27 2.1
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 27 2.7
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 26 3.6
02_02_0046 + 6340556-6340589,6343022-6343131,6343208-6343307,634... 26 3.6
11_05_0056 + 18698795-18698813,18699353-18699936 26 4.8
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 26 4.8
07_03_1744 + 29171372-29171438,29172789-29173768 25 6.3
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 25 6.3
>12_02_0412 - 18799217-18801061
Length = 614
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 43 ICYKSSCAPIRLCASYLSLFCPKNSVL 123
ICY P+R C YLS+F P++ +
Sbjct: 89 ICYSDLSLPVRTCLLYLSIFRPEDETV 115
>02_03_0148 -
15741241-15741376,15742155-15742237,15742313-15742394,
15742514-15742578,15742667-15742792,15743138-15743188
Length = 180
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 11 LTSGYWSVSRLFVIRAPVL--LYDCVPLIYHYFVP 109
LTSG+W +SR F +L + VP ++ +F+P
Sbjct: 77 LTSGWWGLSRHFHYVPEILSAFFWTVPALFDHFLP 111
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 46 CYKSSCAPIRLCASYLSLFCPKNS 117
CY S A ++ C+ YLS+F PK+S
Sbjct: 188 CYSSLPADLKTCSLYLSVF-PKDS 210
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 11 LTSGYWSVSRLFVIRAPVLLYDCVPLIYHYFVPKT 115
LT+G+W + F I P + CV + ++ +T
Sbjct: 515 LTTGFWPSYKTFDINLPAEMVKCVEVFKEFYQTRT 549
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 11 LTSGYWSVSRLFVIRAPVLLYDCVPLIYHYFVPKT 115
LT+G+W + F I P + CV + ++ +T
Sbjct: 521 LTTGFWPSYKSFDINLPAEMVKCVEVFKEFYQTRT 555
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 46 CYKSSCAPIRLCASYLSLFCPKNSV 120
CY A +R C+ YLS+F N +
Sbjct: 577 CYNDMPAELRTCSLYLSIFPKGNKI 601
>02_02_0046 +
6340556-6340589,6343022-6343131,6343208-6343307,
6343392-6343477,6343846-6344124,6346337-6346435,
6346803-6346826
Length = 243
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 203 PPSCCCAIASNIESNLSGSFAIFSSNN 123
P S C S++ S L G+F F+S N
Sbjct: 109 PKSACSTPCSSLGSGLQGAFVPFNSTN 135
>11_05_0056 + 18698795-18698813,18699353-18699936
Length = 200
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 5 EDLTSGYWSVSRLFVIRAPVLLYDCVPLIY 94
E++TSG W+VS V VL C L+Y
Sbjct: 56 ENITSGRWTVSDETVALLRVLAEGCEDLMY 85
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 11 LTSGYWSVSRLFVIRAPVLLYDCVPLIYHYF 103
LT+GYW + I P+ + CV + Y+
Sbjct: 491 LTTGYWPTYKNSDINLPLEMVKCVEVFKEYY 521
>07_03_1744 + 29171372-29171438,29172789-29173768
Length = 348
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 100 FCPKNSVLLLLEKMANDPERFDSMLLAMAQQH 195
+CPK+ L ++K+ ++ E+FD M H
Sbjct: 104 YCPKDKSLWAVQKVLDEFEKFDGPTYHMFGNH 135
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 43 ICYKSSCAPIRLCASYLSLFCPK 111
+CY P++ C SY SLF PK
Sbjct: 567 LCYDHLSNPLQQCVSYCSLF-PK 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,677,871
Number of Sequences: 37544
Number of extensions: 87605
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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