Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E03
         (214 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear migr...    32   0.095
AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p pro...    32   0.095
AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA...    32   0.095

>AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear
           migration protein NudC protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 139 MANDPERFDSMLLAMAQQHEGGVKE 213
           MA +  +FD++LLA+A++H GGV E
Sbjct: 1   MAAEEGKFDNILLAVAEKHHGGVPE 25


>AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p
           protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 139 MANDPERFDSMLLAMAQQHEGGVKE 213
           MA +  +FD++LLA+A++H GGV E
Sbjct: 1   MAAEEGKFDNILLAVAEKHHGGVPE 25


>AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA
           protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 139 MANDPERFDSMLLAMAQQHEGGVKE 213
           MA +  +FD++LLA+A++H GGV E
Sbjct: 1   MAAEEGKFDNILLAVAEKHHGGVPE 25


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,769
Number of Sequences: 53049
Number of extensions: 155997
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 24,988,368
effective HSP length: 50
effective length of database: 22,335,918
effective search space used: 446718360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)