Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E03
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    33   0.028
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      33   0.028
AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    28   0.79 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   1.8  
Z19555-5|CAA79614.1|  200|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    25   9.7  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 154 ERFDSMLLAMAQQHEGGVKE 213
           ERFDS+LL+MAQQ  GGV E
Sbjct: 5   ERFDSVLLSMAQQLSGGVPE 24


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 154 ERFDSMLLAMAQQHEGGVKE 213
           ERFDS+LL+MAQQ  GGV E
Sbjct: 5   ERFDSVLLSMAQQLSGGVPE 24


>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 163 QIFPDHLPFFLVIIIHCFWDKIMINKRHTIV*EHRSSYNK*STNTPIPRRQILV 2
           QIF    P F + I+ C W       RH+    +R SY   +    + RR +L+
Sbjct: 159 QIFFAFFPNFQLKILECIWHIWATLDRHSATAVYRKSYPNAAPTQIVSRRGVLM 212


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 206 TPPSCCCAIASNIESNLSGSFAIFSSNNNTLFLGQN 99
           T P C  A    IE++        + NN+T+  GQN
Sbjct: 744 TEPFCLSATCQGIEASSKSDGLTVTPNNSTISFGQN 779


>Z19555-5|CAA79614.1|  200|Caenorhabditis elegans Hypothetical
           protein F02A9.1 protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 82  ASYLSLFCPKNSVLLLLEKMANDPERFDSMLLAMAQQHEGG 204
           A + SLF    S + L+  + N   R+D M LAM  Q + G
Sbjct: 3   AMFHSLFAL--SFVSLVASINNQNSRYDKMFLAMVCQDQNG 41


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 206 TPPSCCCAIASNIESNLSGSFAIFSSNNN 120
           TPPSC CA   NI  + +    + + NNN
Sbjct: 86  TPPSCYCA-QENIPISSNVGHVLSTINNN 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,036,996
Number of Sequences: 27780
Number of extensions: 82864
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)