Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E01
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 77 8e-16
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 1.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 2.7
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 25 3.6
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 24 4.7
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 24 6.3
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 24 6.3
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 23 8.3
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 23 8.3
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 23 8.3
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 23 8.3
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 76.6 bits (180), Expect = 8e-16
Identities = 34/76 (44%), Positives = 52/76 (68%)
Frame = +3
Query: 87 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMRKAIKDHL 266
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGK+TM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 267 ETNPALEKLLPHIKGN 314
P LE+LLP ++GN
Sbjct: 68 NDMPELERLLPVVRGN 83
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 39 PYFTQSKMGREDKATWKSNY 98
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 233 HHDEESHQGPS*NKSSSRKTASSHQG 310
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 246 SSSWCLCP*AQCCDHAMKYGSVASVASLH 160
S S + P ++ CD A KYG++ + +H
Sbjct: 317 SMSGNVAPISEICDLAKKYGAITFLDEVH 345
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 158 VRTHYET-FWVFVQQLDDFNEVIGLPGSLVLP 66
V H ET +++VQ + N+ + + GSL P
Sbjct: 477 VAMHVETTLYIYVQSFQNANQTVSICGSLPEP 508
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +3
Query: 21 LKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLL 122
L P F Q + +DK WK ++ + L
Sbjct: 103 LNIAMRPIFPQHRYTEQDKKNWKKKVIIEDLNFL 136
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 23.8 bits (49), Expect = 6.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +3
Query: 27 FLRSPYFTQSKM---GREDKATWKSNYFVKI 110
F FT+ K GR KAT K NY VK+
Sbjct: 54 FSNGALFTEGKARDRGRWAKATMKKNYGVKL 84
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 23.4 bits (48), Expect = 8.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 135 KCFIVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMRKAIKDHLETNPA 281
K IVGA NVGS + +S IV++ D +KA + ++ N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVII--DLNKKKAEGEAMDLNHA 68
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 290 FFESWICFKMVLDGFPHHGVFAHE 219
FF+S++CF +V+ F H + +
Sbjct: 515 FFQSYLCFPVVVIVFIAHALITRQ 538
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 176 DATDPYFIAWSQHCAHGQRHHD 241
D+T Y+ AW Q C + R+ +
Sbjct: 238 DSTKRYWRAWIQQCVYTGRYRE 259
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 23.4 bits (48), Expect = 8.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 173 LRAYIVRTHYETFWVFVQQLDDFN---EVIGLPGSLVLPTHLGLSE 45
LRA+I R+ F FV + + FN E++ + GS++ L L E
Sbjct: 275 LRAFIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKE 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,193
Number of Sequences: 5004
Number of extensions: 29065
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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