Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E01
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 80 4e-16
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 79 5e-16
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 79 5e-16
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 29 0.77
02_04_0427 - 22809481-22810335 28 1.3
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 1.3
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 1.8
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 2.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 3.1
07_03_0662 + 20431448-20432767 27 3.1
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 3.1
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 4.1
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 4.1
04_01_0404 - 5297341-5297970,5298304-5299179 27 4.1
06_03_0675 - 23428948-23431389 26 5.4
06_01_1085 - 8886868-8887556,8887629-8888574 26 5.4
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 26 5.4
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 26 5.4
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 5.4
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728... 26 7.1
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 26 7.1
08_01_0038 - 282431-283954 25 9.4
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 25 9.4
07_01_0417 - 3183561-3184640 25 9.4
04_01_0411 + 5449769-5450662,5450753-5451382 25 9.4
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 25 9.4
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 79.8 bits (188), Expect = 4e-16
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +3
Query: 66 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMR 245
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 246 KAIKDHLET--NPALEKLLPHIKGN 314
+ IK H + N +L+P + GN
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGN 88
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 79.4 bits (187), Expect = 5e-16
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +3
Query: 66 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMR 245
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 246 KAIKDHLET--NPALEKLLPHIKGN 314
+ IK H + N +L+P + GN
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGN 88
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 79.4 bits (187), Expect = 5e-16
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +3
Query: 66 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMR 245
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK+T++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 246 KAIKDHLET--NPALEKLLPHIKGN 314
+ IK H + N +L+P + GN
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGN 88
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 144 IVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMRKAIKDHLETNPALEKLL 296
++G +NV M RI+ R H+++ +G D +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 278 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 192
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 305 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 189
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 12 CLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPK 137
CL L+FL T + R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 87 KSNYFVKIIQLLDEYPKCF 143
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 129 YPKCFI--VGADNVGSQQMQQIRISL 200
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 192 YGSVASVASLHCPHPL 145
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 188 PYFIAWSQHCAHGQRHHDEESHQG 259
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 168 SLHCPHPL*NILGIRPTVG 112
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 168 SLHCPHPL*NILGIRPTVG 112
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 240 MRKAIKDHLETNPALEKLLPHI 305
M+ IK+ L NP L LLPH+
Sbjct: 349 MKLVIKETLRLNPVLPLLLPHL 370
>06_03_0675 - 23428948-23431389
Length = 813
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 144 IVGADNVGSQQMQQIRISLRGHSIVLMGKDTMMRKAIKDHLET 272
IV +NV S +Q+ R+ RG+ IV DT++ ++ +T
Sbjct: 108 IVWTNNVSSSNVQEARLLERGNLIVKGQGDTILWQSFASPTDT 150
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 222 MGKDTMMRKAIKDHLETNPALEKLLP 299
+GK T++R A+K+ + +P L L+P
Sbjct: 378 LGKMTLLRAAMKEAMRLHPPLPLLIP 403
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 191 YFIAWSQHCAHGQRHHD 241
YFI+WS + H R HD
Sbjct: 231 YFISWSSYKLHSIRRHD 247
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 168 SLHCPHPL*NILGIRPTVG 112
S+ CP L +++GI+PTVG
Sbjct: 209 SILCPASLNSVVGIKPTVG 227
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 177 SVASLHCPHPL*NILGIRPTVG 112
+ AS+ CP +++GI+PTVG
Sbjct: 204 TTASILCPAAANSVVGIKPTVG 225
>08_02_0028 -
11371547-11371657,11372326-11372518,11372738-11372814,
11373498-11373608,11374533-11374659,11374745-11375022
Length = 298
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 67 GRTRLPGSPITSLKSSNCWT 126
GR+ LP P S+ SS CW+
Sbjct: 228 GRSWLPSPPRISISSSFCWS 247
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 161 CRLATDATDPYFIAWSQHCAHGQRHHDEESH 253
C + +P + HC HGQR +E H
Sbjct: 136 CGVGHGNYNPSYTCSCPHCLHGQRTAPQEEH 166
>08_01_0038 - 282431-283954
Length = 507
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 126 EYPKCFIVGADNVGSQQMQQIR-ISLRGHSIVL---MGKDTMMRKAIKDHLETNPALEKL 293
EY ++ + ++ ++R + +G IV +G+ ++ IK+ L +PA L
Sbjct: 318 EYAMAELIQKPQLMAKLQAEVRGVVPKGQEIVTEEQLGRMPYLKAVIKETLRLHPAAPLL 377
Query: 294 LPHI 305
+PH+
Sbjct: 378 VPHV 381
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 192 YGSVASVASLHCPHP 148
YG +AS SL CP P
Sbjct: 417 YGGLASAGSLQCPRP 431
>07_01_0417 - 3183561-3184640
Length = 359
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +2
Query: 167 LATDATDPYFIAWSQHC--AHGQRH 235
L DA + YF SQHC H RH
Sbjct: 153 LVDDAANAYFALLSQHCIPVHSFRH 177
>04_01_0411 + 5449769-5450662,5450753-5451382
Length = 507
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 240 MRKAIKDHLETNPALEKLLPHI 305
M+ IK+ + NP L L+PH+
Sbjct: 355 MKMVIKETMRLNPVLPLLMPHL 376
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 200 AWSQHCAHGQRHHDEESHQGPS*NKSSSRKTASSHQG 310
AWS H HH+ H PS + S + +S+ G
Sbjct: 104 AWSPARDHAHAHHNHHHHHHPS-DSSDTASPSSNGAG 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,108
Number of Sequences: 37544
Number of extensions: 200935
Number of successful extensions: 495
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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