Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D22
         (223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   1.4  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   1.8  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    24   2.4  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   3.1  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    23   5.5  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    23   7.2  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    22   9.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    22   9.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    22   9.5  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 44  EVDTY-YYNDMILFFITYLGKMGYAKKNLLIFFL*MERTLIQ*IRFYVFNF 193
           E+D Y Y+++  ++++ Y  +MGYA   +   +L  E   +    F  FN+
Sbjct: 489 EIDEYGYFHNSFVYYL-YAAQMGYALAEINAAYLMDENKFLINSVFRYFNY 538


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 70  YDFIFHYLLR*NGLREEKLVNILFVNGTYFNTIDKILRFQ 189
           Y +   YL   NGLR ++++N L +         KI RF+
Sbjct: 2   YPYCLKYLT--NGLRSKQMINFLCIQNILSARTLKICRFR 39


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 164 VLKYVPFTKRILTSFSSRNPFYLSR 90
           V+K  P TK ++ S S+  P YL R
Sbjct: 110 VIKETPLTKGVVISESTGVPVYLKR 134


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 179 KILSIVLKYVPFTKRILTSFSSRNPFYL 96
           K+   VLK  PFTK    +  ++NP Y+
Sbjct: 30  KVNEHVLKSEPFTKTYYFARDAKNPDYI 57


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +1

Query: 133 ILFVNGT-YFNTIDKIL 180
           +L+VN   Y+NTIDKIL
Sbjct: 206 LLYVNRLRYWNTIDKIL 222


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 103 NGLREEKLVNILFVNGTYFNTIDK 174
           NG  EE L++   +NG  F  +DK
Sbjct: 382 NGEEEEALMSEEEINGAKFAAVDK 405


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 107 GYAKKNLLIFFL*MERTLIQ*IRFYVFNFIN 199
           G  +KN++I FL +   LI  +  Y   F+N
Sbjct: 114 GLKRKNMVIIFLEILMCLIGYVESYDRQFVN 144


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 48  STHIIIMI*FYFSLPT 95
           STH + +I FY+ +PT
Sbjct: 281 STHFLRLIEFYWGVPT 296


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 175 SYLLY*STFHSQKEY*QVFLRVTHFT 98
           S+L Y  TF+    Y   FL+V H+T
Sbjct: 375 SFLFY-ITFYCWDNYYYSFLQVVHYT 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,419
Number of Sequences: 5004
Number of extensions: 14366
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)