Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D22
         (223 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    25   8.3  

>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 47  VDTYYYNDMIL-FFITYLGKMGY 112
           V+ ++  D+IL FF+ YL KM Y
Sbjct: 140 VNAFFAVDIILTFFVAYLDKMSY 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,664,636
Number of Sequences: 37544
Number of extensions: 64782
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)