Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D22
         (223 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    28   1.0  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    28   1.0  
AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin monoox...    25   5.5  
AC006663-1|AAF39901.1|  518|Caenorhabditis elegans Flavin-contai...    25   5.5  

>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 173 LSIVLKYVPFTKRILTSFSSRNPFYL 96
           LSI +KY PFT+RIL  +  +  FY+
Sbjct: 290 LSIFVKY-PFTRRILQQYPDQCSFYM 314


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 173 LSIVLKYVPFTKRILTSFSSRNPFYL 96
           LSI +KY PFT+RIL  +  +  FY+
Sbjct: 290 LSIFVKY-PFTRRILQQYPDQCSFYM 314


>AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 518

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 68  HYNNMCRLLKRFIMHYTLL 12
           H   MCR LK +  HY LL
Sbjct: 85  HNREMCRYLKSYAEHYGLL 103


>AC006663-1|AAF39901.1|  518|Caenorhabditis elegans
           Flavin-containing monooxygenasefamily protein 5 protein.
          Length = 518

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 68  HYNNMCRLLKRFIMHYTLL 12
           H   MCR LK +  HY LL
Sbjct: 85  HNREMCRYLKSYAEHYGLL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,708,556
Number of Sequences: 27780
Number of extensions: 75855
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)