Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D21
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 149 8e-38
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 149 8e-38
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 40 1e-04
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 1.3
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 4.0
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 24 5.3
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 24 5.3
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 24 5.3
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 24 5.3
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 7.1
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 149 bits (361), Expect = 8e-38
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRD 292
QPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHD 88
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 149 bits (361), Expect = 8e-38
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRD 292
QPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHD 88
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 39.5 bits (88), Expect = 1e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 155 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 286
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP 89
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 1.3
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 205 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 26
GF +++ + R E +RLP G + +V L T + L++ P + H
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409
Query: 25 D 23
D
Sbjct: 410 D 410
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 92 WADKEFKKAHMGTRWKANPFGGASHAKGIV 181
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 196 ANFFEDDALSMRCTTEGVRLPSRT 125
+++FE + + + CT G R PS+T
Sbjct: 51 SSYFESEKIKIACTVSGPR-PSKT 73
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 98 DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 193
D+EF+ + +K PF HA +V+ V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 264 LPFLMSCTRTHLRMAEFGCLAST 196
L L+SC +T+ A FGC T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 205 GFNANFFEDDALSMRCTTEGVRLPSR 128
G + NFFE+D S+R ++ + +R
Sbjct: 11 GLSLNFFEEDGPSLRLNSDSLDFLAR 36
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 93 GPTRNSKKPTWVRDGR 140
G R +KK TWVRD +
Sbjct: 308 GKWRQAKKYTWVRDNQ 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,299
Number of Sequences: 5004
Number of extensions: 25036
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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