Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D20
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 32 0.043
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.057
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.30
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 0.70
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 0.92
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.2
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 2.1
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 3.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 3.7
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 3.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.9
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 6.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.5
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 8.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 24 8.6
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 24 8.6
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.9 bits (69), Expect = 0.043
Identities = 24/106 (22%), Positives = 45/106 (42%)
Frame = -3
Query: 411 RGAKKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTG 232
R A++N +E EE+ +K + R+ E + AEE A E K A+
Sbjct: 595 REAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK-AKREA 653
Query: 231 RKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLEERR 94
++ + AE+ K+E + R+ + + + K+ T +R
Sbjct: 654 EEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKR 699
Score = 31.1 bits (67), Expect = 0.075
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -3
Query: 420 NSARGAKKNTTKELEE---RRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIK 250
N+ R A++ +E EE R K+E E++ R+ E + AEE A E K
Sbjct: 560 NAKREAEEQAKREAEEKAKREAEEKAKREAEEKA---KREAEENAKREAEEKAKREAEEK 616
Query: 249 LAEGTGRKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLEERR 94
A+ ++ + AE++ K+E + R+ + + + K+ +R
Sbjct: 617 -AKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Score = 29.9 bits (64), Expect = 0.17
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = -3
Query: 420 NSARGAKKNTTKELEE---RRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGA---VEER 259
N+ R A++ +E EE R K+E E++ R+ E + AEE A EE+
Sbjct: 600 NAKREAEEKAKREAEEKAKREAEEKAKREAEEKA---KREAEEKAKREAEEKAKREAEEK 656
Query: 258 GIKLAEGTGRKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKK 118
+ AE ++ + A+ E ++ + K+ E++ R+ ++
Sbjct: 657 AKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEE 703
Score = 29.5 bits (63), Expect = 0.23
Identities = 23/104 (22%), Positives = 39/104 (37%)
Frame = -3
Query: 411 RGAKKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTG 232
R A++ +E EE+ +K + + R+ E + AEE A E K+ T
Sbjct: 635 REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETE 694
Query: 231 RKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLEE 100
K E+ ++ D + + + N K TN E
Sbjct: 695 ENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSKQTNATE 738
Score = 27.9 bits (59), Expect = 0.70
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Frame = -3
Query: 411 RGAKKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGA---VEERGIKLAE 241
R A++ +E EE+ +K + + R+ E + AEE A EE+ + AE
Sbjct: 571 REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 240 GTGRKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLE 103
++ + A+ E +++ + K E++ R ++ E
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKRE 676
Score = 27.5 bits (58), Expect = 0.92
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = -3
Query: 411 RGAKKNTTKELEE---RRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAE 241
R A++ +E EE R K+E E++ R+ E + AEE A E K A+
Sbjct: 579 REAEEKAKREAEEKAKREAEENAKREAEEKA---KREAEEKAKREAEEKAKREAEEK-AK 634
Query: 240 GTGRKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLEERR 94
++ + AE++ K+E + R+ + + + K+ +R
Sbjct: 635 REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKR 683
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.5 bits (68), Expect = 0.057
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = -3
Query: 384 ELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAE 205
E+ E R+ + ++KE EK+ LRK ++ K +G+ E + +E + PAE
Sbjct: 171 EIPEVRVKTKKEKEREKKEREKLRKKQQQAKK---KGSTGEDTLASSEVSSEVDISTPAE 227
Query: 204 DELKKEDYQACGRK 163
++ + QA G K
Sbjct: 228 NDSSAKGKQAAGSK 241
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.30
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -3
Query: 411 RGAKKNTTKELEERRLSSPRKKELEKRGLSNLRKGER 301
R K+ T KE+E+ + + KKE+++R L ++ E+
Sbjct: 285 RRNKRYTRKEMEQMKRRTKEKKEMKRRALYDIASDEK 321
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 0.70
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 423 PNSARGAKKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKL- 247
PNS R +K+ + +++ + + K +RG++ L++ + + H + + E +L
Sbjct: 1007 PNSPRASKRVSLDSEDKKLVPASPDKSAVQRGITALKR-DAEGMSHIWQLRLREMEFQLK 1065
Query: 246 AEGTGRKRTIKPAEDELK 193
AE GRKR A + L+
Sbjct: 1066 AEQEGRKRDKLGARERLQ 1083
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 0.92
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -3
Query: 363 SSPRKKE-LEKRGLSNLRKGERTIIKHAEEG-----AVEERGIKLAEGTGRKRTIKPAED 202
++P +KE LEK+ + KG+R EEG +R EG RKR PA +
Sbjct: 56 AAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANN 115
Query: 201 ELKK 190
L K
Sbjct: 116 PLNK 119
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.2
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Frame = -3
Query: 402 KKNTTKELEERRLSSPRKKELEK--RGLSNLRKGERTIIKHAEEG----AVEERGIKL-A 244
KKN E+ R SS K ELEK + L +L + + IK +E + +K A
Sbjct: 129 KKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERINDLTYDYETLKANA 188
Query: 243 EGTGRKRTIKPAEDELKKEDYQACGRKMTTVEEDDCNRRRKKTTNLEE 100
+ + K+T+ ++ E E++Q+ + E++ N+R K E+
Sbjct: 189 DDSEGKQTL-VSKREAALEEFQS----KLLIRENEINKRELKMNGKED 231
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 391 YQGAGRKKTIKPAEEGAGEKRTIKPAERRKDYHQACGRRSCGRK 260
YQ G K + EK+ KP +R+KD +A ++ G++
Sbjct: 40 YQPKGAMKEVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKR 83
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 14 EDRLPRHSRRLHKKLQQKSHLANTPSYLLS 103
E+ L RH+++LH+K + S A +L S
Sbjct: 662 EESLKRHAKKLHEKKTKSSQDATIDHHLTS 691
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 92 YLLSSRLVVFFLRRLQSSSSTVVIFLP 172
Y L SRLV L SSS ++++FLP
Sbjct: 795 YHLISRLVSSIDAELGSSSGSILVFLP 821
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 313 ERRKDYHQACGRRSCGRKRNQACGRNWKKEDYQACG 206
ERR + Q R + R RNQ G + ED ++ G
Sbjct: 431 ERRFERQQRLMREAAARGRNQDAGADLDDEDPESMG 466
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 4.9
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = -3
Query: 333 RGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAEDELKKEDYQACGRKMTT 154
+G N KGE+ + K +E + E LAE + + L ++ RK+
Sbjct: 751 KGELNASKGEKDLRKRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQLSDAARKVKF 810
Query: 153 VEEDD 139
E +
Sbjct: 811 ESEKE 815
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 59 QQKSHLANTPSYLLSSRLVVFFLR 130
Q+K HLA +Y+L +R+ FLR
Sbjct: 85 QEKYHLATFDNYVLKNRVRPTFLR 108
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 6.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 41 RLHKKLQQKSHLANTPSYLLSSR 109
+LHK LQ S N P LL SR
Sbjct: 42 KLHKVLQTHSSFVNIPCSLLVSR 64
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 8.6
Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = -3
Query: 405 AKKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRK 226
++ + TK+ +++ +KK +K+ S T ++ A+ E++ + + G
Sbjct: 41 SQASVTKDNKKKAAKRAKKKAAKKKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFT 100
Query: 225 RTIKPAE-DELKKEDYQACGRKMTTVEEDDCNRRRKKTT 112
+TI + D++ + + TVE N+ T+
Sbjct: 101 QTIVEKDADQVDEPLEPIASSALGTVEPPTDNKPSASTS 139
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 2 HEEKEDR-LPRHSRRLHKKLQQKS 70
H+E +DR + RH LH LQ+ S
Sbjct: 516 HDETKDRNIARHVINLHTNLQESS 539
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 383 SWKKEDYQARGRRSWRKEDYQ 321
S+ DYQAR RR + +E Q
Sbjct: 177 SYSSSDYQARSRRRFSEETTQ 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,143
Number of Sequences: 5004
Number of extensions: 29718
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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