Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D19
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 33 0.087
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 29 1.4
05_04_0204 - 19022329-19023990 29 1.4
10_07_0029 + 12031711-12032464,12044289-12044386 29 1.9
05_05_0392 + 24629528-24630442 29 1.9
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 29 2.5
05_05_0284 + 23851033-23851279,23851514-23851827 29 2.5
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.5
04_01_0244 - 3194141-3195091,3195301-3195312 28 3.3
03_05_0250 - 22394024-22394148,22394379-22394940 28 3.3
01_06_1362 - 36677281-36677574,36677661-36677959,36678435-366785... 28 3.3
04_03_0928 + 20882398-20882689,20882840-20882958,20883208-208833... 28 4.3
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 28 4.3
10_01_0162 + 1820761-1821855 27 5.7
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 27 5.7
07_03_0097 + 13372270-13372399,13372958-13373457 27 7.5
04_03_0801 - 19828175-19828770,19828913-19828994 27 7.5
10_01_0204 + 2199778-2200835,2201212-2201311 27 10.0
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 27 10.0
07_03_1382 - 26170563-26170631,26171151-26171843 27 10.0
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039 27 10.0
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 27 10.0
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 27 10.0
03_02_0572 + 9569578-9570534 27 10.0
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 33.5 bits (73), Expect = 0.087
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 189 PN*CCSCRYPSHTGAQTSPGCRCLTGGRDAVF-HRCSGCGTRASTSSEQSTTPECLC 22
P+ CC C S T AQ G R G DAV HRCS CG A + + +C C
Sbjct: 86 PSTCCVC-LSSLTTAQ-GVGSR----GADAVVVHRCSVCGVAAHSGCSRGAEKDCKC 136
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGC 127
CRC CG + C CC G+ CY P C T + SP C
Sbjct: 158 CRCHCGGGYGCRCC--GA--APPCYCVPIGGGGCSVVQFTYDEPSPAC 201
>05_04_0204 - 19022329-19023990
Length = 553
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 57 TYSPEFHNRCTGGRRHRARQ 116
TY+P H CTGGR H A++
Sbjct: 210 TYTPIVHAYCTGGRIHEAKR 229
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 1 RTREKSTTKAFGRRGLFAGRTRPSSTTAAPVEDGIAPASETPAPRARL 144
RT + TT A R L P++ AAP PA++ PAP + L
Sbjct: 188 RTTPRKTTTAPVRIQLAPRNPPPAAAPAAPPVPPAVPAAQAPAPASAL 235
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 115 SETPAPRARLRPGMRRI 165
SETPAP AR RP RR+
Sbjct: 51 SETPAPSARARPRQRRV 67
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 200 HRPTILLPLVQHPQK*SRPHQH-RQEHSVAADL 295
H PTILLPL+ RPH H Q +VAA L
Sbjct: 125 HLPTILLPLLLLFPSGPRPHPHLLQSFAVAAHL 157
>05_05_0284 + 23851033-23851279,23851514-23851827
Length = 186
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 153 YEKDIYNYNISWDHCSTVRRFYFLWYNIRRS 245
+E+ +YN +DH VRRF +N +R+
Sbjct: 103 FERYCKSYNRKYDHAQMVRRFRIFKFNAKRT 133
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 70 SSTTAAPVEDGIAPASETPAPRARL 144
S+TTAAPV AP SE AP A +
Sbjct: 777 SATTAAPVGAAAAPISEPTAPAAAI 801
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 7 REKSTTKAFGRRGLFAGRTRPSSTTAAPVEDGIAPASETPAPRARLRP 150
RE + K G RT P TT APV +AP + P P A P
Sbjct: 175 RENAQLKGLPAPGGVRIRTTPRKTTTAPVRIQLAPRN-PPPPAAPAAP 221
>03_05_0250 - 22394024-22394148,22394379-22394940
Length = 228
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 154 YRGADEPWVQVSHWRARCRLPPVQRLWNSGEYVQRTI 44
Y+GAD PWV++ W + + R++N G + R I
Sbjct: 22 YQGADLPWVKLI-WNSYYQTKVPHRVFNKGSFWWRDI 57
>01_06_1362 -
36677281-36677574,36677661-36677959,36678435-36678524,
36678973-36679141,36679247-36679369,36680020-36680046
Length = 333
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 58 RTRPSSTTAAPVEDGIAPASETPAPRARLRPGMRR 162
R R +S A +E +A A+E AP RP MRR
Sbjct: 253 RMRRTSAVVAAMEKVMALAAECTAPDRAARPAMRR 287
>04_03_0928 +
20882398-20882689,20882840-20882958,20883208-20883330,
20883768-20883866,20883978-20884022,20884295-20884390
Length = 257
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Frame = +1
Query: 16 STTKAFGRRG--LFAGRTRP-----SSTTAAPVEDGIAPASETPAPRAR 141
+TT GRRG LFA R RP +++ A P E G++ P P+AR
Sbjct: 32 TTTSTSGRRGLFLFASRCRPGPRRRAASAAVPPEHGLS----QPQPQAR 76
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 58 RTRPSSTTAAPVEDGIAPASETPAPRARLRPGMRRI 165
R R A P APA P+P AR RP R+
Sbjct: 30 RKRARRQAAPPAAPAPAPAPARPSPAARRRPTCARV 65
>10_01_0162 + 1820761-1821855
Length = 364
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 257 HQHRQEHSVAADLEYALHNCAPGR 328
H+HRQ+ + AA AL CA GR
Sbjct: 77 HRHRQDAAAAAAATVALRVCAHGR 100
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -3
Query: 315 QLCRAYSRSAATECSCRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHT 151
Q R AA +CS LD G R RC+SGP+ CS R P+ T
Sbjct: 58 QAAREAEAVAAADCSGHGNVFLDGVTGEDGRPGCECNRCFSGPD--CSVRTPNCT 110
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 204 RCYSGPN*CCSCRYPSHTGAQTSPGCRCL-TGGRDAVFHRCSGCGTRASTSSEQSTTPE 31
RC P C SC P + +S GC C + C+G +A ++ PE
Sbjct: 98 RCILPPIVCSSCYAPPAPSSCSSHGCSCSPSNSSPPAAEACNGSRQQAHGTAAAPPHPE 156
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = -3
Query: 267 RCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCS--CRYPSHTGAQTSPGCRCLTGGRDAVF 94
RC CG+D G C+ G G C G C C P P C GG V+
Sbjct: 160 RCKCGVDGCGGGCSGGHG--GECGGGGGGCKKPCCSPPPCPWQPVCPPPPC-GGGGYVVY 216
Query: 93 HRCSGC 76
+ GC
Sbjct: 217 EQPEGC 222
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 37 RRGLFAGRTRPSSTTAAPVEDGIAPASETPAPRARLRPGMRR 162
R G AGR RP P+ A A R + RP MRR
Sbjct: 70 RWGGSAGRNRPHGLAKCPMSPRRAGAWRARMRRRKARPEMRR 111
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -3
Query: 222 GSRIVGRCYSGPN*CCSC---RYPSHTGAQTSPGCRCLTGGRDAV 97
G+R C + CSC Y + TG+ T RCL G D V
Sbjct: 383 GNRSYEECAAECRRNCSCVAYAYANLTGSSTRDATRCLVWGGDLV 427
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/50 (28%), Positives = 17/50 (34%)
Frame = -3
Query: 258 CGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGG 109
CG C C R+ + CC CR P T+P GG
Sbjct: 83 CGHGEVCAGCALHIRV----FQNNRLCCICRSPCRVVVVTNPDAIAAAGG 128
>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
Length = 218
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -3
Query: 282 TECSCRCWCGLDHFCG----CCTRGSRIVGRCY 196
++ S CW G D + CCT S I+ +CY
Sbjct: 182 SKSSLDCWSGEDEYSPNAEVCCTLDSSILQQCY 214
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 67 PSSTTAAPVEDGIAPASETPAPR--ARLRPGMRR 162
P S AA E APA+E PA + R+RP + R
Sbjct: 77 PPSKAAAEGEQASAPANEAPAVKVVVRVRPTVSR 110
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 150 RYEKDIYNYNISWDHCSTVRRFYFLWYNIRRSDRDHTNTGKNTRSR 287
RY +++ Y +W HC + + F++ W ++ ++ GK +RS+
Sbjct: 202 RYGHNLHYYYDTWLHCESKQPFFY-WLDVGEG-KEINLEGKCSRSK 245
>03_02_0572 + 9569578-9570534
Length = 318
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +1
Query: 28 AFGRRGLFAGRTRPSSTTA--APVEDGIAPASETPAP 132
A G FAGR A AP E +AP PAP
Sbjct: 15 AAAANGAFAGRVLEEQPAAAPAPAEAPVAPVDPLPAP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,070
Number of Sequences: 37544
Number of extensions: 297766
Number of successful extensions: 887
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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