Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D19
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 37 0.006
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 36 0.014
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.014
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 36 0.014
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 30 0.72
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 29 1.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 1.7
U58728-1|AAB00588.1| 430|Caenorhabditis elegans Temporarily ass... 29 2.2
L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 28 2.9
AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical ... 27 5.1
Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical pr... 27 6.7
U64854-3|AAB18315.2| 304|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 6.7
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 37.1 bits (82), Expect = 0.006
Identities = 26/68 (38%), Positives = 27/68 (39%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGGRDAV 97
C C C CG CGC G G C P CC CR T +T RC T R
Sbjct: 63 CGC-CGCGCG-CCGCGGGGGGGCGCCCCRPKCCCCCR-RCCTCCRTCCCTRCCTCCRPC- 118
Query: 96 FHRCSGCG 73
C GCG
Sbjct: 119 ---CCGCG 123
Score = 31.5 bits (68), Expect = 0.31
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPG-CRCLTGGR 106
C C C C CC R C CC+C P G G C C GGR
Sbjct: 83 CGCCCCRPKCCCCCRRCCTCCRTCCCTR--CCTCCRPCCCGCGCGCGCCGCGGGGR 136
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 411 CLRGGSFFSRCYA*CYRPQTRIRAQIKPRPGAQLCRAYSRSAATECSCRCWCGLDHFCGC 232
C GG C C RP+ R CR + C C CG CGC
Sbjct: 73 CGCGGGGGGGCGCCCCRPKCCCCC----RRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 128
Query: 231 CTRG 220
C G
Sbjct: 129 CGCG 132
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 35.9 bits (79), Expect = 0.014
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCT--RGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGGRD 103
C C C CG CGCC G G C P CC CR T +T RC T R
Sbjct: 63 CGC-CGCG----CGCCGCGGGGGGCGCCCCRPRCCCCCR-RCCTCCRTCCCTRCCTCCRP 116
Query: 102 AVFHRCSGCG 73
C GCG
Sbjct: 117 C----CCGCG 122
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPG-CRCLTGGR 106
C C C C CC R C CC+C P G G C C GGR
Sbjct: 82 CGCCCCRPRCCCCCRRCCTCCRTCCCTR--CCTCCRPCCCGCGCGCGCCGCGGGGR 135
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 309 CRAYSRSAATECSCRCWCGLDHFCGCCTRG 220
CR + C C CG CGCC G
Sbjct: 102 CRTCCCTRCCTCCRPCCCGCGCGCGCCGCG 131
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 35.9 bits (79), Expect = 0.014
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCT--RGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGGRD 103
C C C CG CGCC G G C P CC CR T +T RC T R
Sbjct: 64 CGC-CGCG----CGCCGCGGGGGGCGCCCCRPRCCCCCR-RCCTCCRTCCCTRCCTCCRP 117
Query: 102 AVFHRCSGCG 73
C GCG
Sbjct: 118 C----CCGCG 123
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPG-CRCLTGGR 106
C C C C CC R C CC+C P G G C C GGR
Sbjct: 83 CGCCCCRPRCCCCCRRCCTCCRTCCCTR--CCTCCRPCCCGCGCGCGCCGCGGGGR 136
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 309 CRAYSRSAATECSCRCWCGLDHFCGCCTRG 220
CR + C C CG CGCC G
Sbjct: 103 CRTCCCTRCCTCCRPCCCGCGCGCGCCGCG 132
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 35.9 bits (79), Expect = 0.014
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCT--RGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGGRD 103
C C C CG CGCC G G C P CC CR T +T RC T R
Sbjct: 65 CGC-CGCG----CGCCGCGGGGGGCGCCCCRPRCCCCCR-RCCTCCRTCCCTRCCTCCRP 118
Query: 102 AVFHRCSGCG 73
C GCG
Sbjct: 119 C----CCGCG 124
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.019
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRC 121
C C C C C CC R C CC+C P G GC C
Sbjct: 82 CGCGCCCCRPRCCCCCRRCCTCCRTCCC--TRCCTCCRPCCCGCGCGCGCGC 131
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCTRG 220
C C C CG CGCC G
Sbjct: 119 CCCGCGCGCG--CGCCGCG 135
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 30.7 bits (66), Expect = 0.54
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 411 CLRGGSFFSRCYA*CYRPQTRIRAQIKPRPGAQLCRAYSRSAATECSCRCWCGLDHFCGC 232
C G C C RP R +P+ CR + C C CG CGC
Sbjct: 56 CCGCGGGGGGCGCCCCRP--RCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 113
Query: 231 CTRG 220
C G
Sbjct: 114 CGCG 117
Score = 30.3 bits (65), Expect = 0.72
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = -3
Query: 240 CGCCT--RGSRIVGRCYSGPN*CCSCRYP-SHTGAQTSPGCRCLTGGRDAVFHRCSGCG 73
CGCC G G C P CC CR T +T RC T R C GCG
Sbjct: 54 CGCCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPC----CCGCG 108
Score = 27.1 bits (57), Expect = 6.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGP-N*CCSCRYPSHTGAQTSPG-CRCLTGGR 106
C C C C CC R C + CC+C P G G C C GGR
Sbjct: 66 CGCCCCRPRCC-CCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCGGGGR 121
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 30.7 bits (66), Expect = 0.54
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 411 CLRGGSFFSRCYA*CYRPQTRIRAQIKPRPGAQLCRAYSRSAATECSCRCWCGLDHFCGC 232
C G C C RP R +P+ CR + C C CG CGC
Sbjct: 59 CCGCGGGGGGCGCCCCRP--RCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 116
Query: 231 CTRG 220
C G
Sbjct: 117 CGCG 120
Score = 30.3 bits (65), Expect = 0.72
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = -3
Query: 240 CGCCT--RGSRIVGRCYSGPN*CCSCRYP-SHTGAQTSPGCRCLTGGRDAVFHRCSGCG 73
CGCC G G C P CC CR T +T RC T R C GCG
Sbjct: 57 CGCCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPC----CCGCG 111
Score = 27.1 bits (57), Expect = 6.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGP-N*CCSCRYPSHTGAQTSPG-CRCLTGGR 106
C C C C CC R C + CC+C P G G C C GGR
Sbjct: 69 CGCCCCRPRCC-CCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCGGGGR 124
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 30.3 bits (65), Expect = 0.72
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = -3
Query: 240 CGCCT--RGSRIVGRCYSGPN*CCSCRYP-SHTGAQTSPGCRCLTGGRDAVFHRCSGCG 73
CGCC G G C P CC CR T +T RC T R C GCG
Sbjct: 52 CGCCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPC----CCGCG 106
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Frame = -3
Query: 411 CLRGGSFFSRCYA*CYRPQTRIRAQIKPRPGAQLCRAYSRSAATECS--CRCWCGLDHFC 238
C G C C RP R +P+ CR + C C C CG C
Sbjct: 54 CCGCGGGGGGCGCCCCRP--RCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGC 111
Query: 237 GCCTRG 220
GCC G
Sbjct: 112 GCCGCG 117
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 270 CRCWCGLDHFCGCCTRGSRIVGRCYSGP-N*CCSCRYPSHTGAQTSPGCRC 121
C C C C CC R C + CC+C P G GC C
Sbjct: 64 CGCCCCRPRCC-CCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCGC 113
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 276 CSCRCWCGLDHFCGCCTRGSRIVGRCYSGPN*CCS--CRYPSHTGAQTSPGCRCLTGGRD 103
C RC G + G C+ GS VG CYS CC + P + S RCL
Sbjct: 404 CPIRCPVG-QNAVGFCSSGSCGVGSCYSKTT-CCQEPIKLPVCSNGMISQK-RCLVAAEC 460
Query: 102 AVFHRCSGCG 73
+ CS G
Sbjct: 461 GLNLECSNGG 470
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 16 STTKAFGRRGLFAGRTRPSSTTAAPVED--GIAPASETPAPRARL 144
ST+ A GLF P+ST AP G APA+ AP + L
Sbjct: 188 STSTAAPSGGLFGSSAAPTSTAPAPSGGLFGAAPATSNAAPTSGL 232
>U58728-1|AAB00588.1| 430|Caenorhabditis elegans Temporarily
assigned gene nameprotein 294 protein.
Length = 430
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 129 CRCLTGGRDAVFHRCSGCGTRASTSSEQST 40
C T A +RC CGTR TS+ +ST
Sbjct: 35 CHSCTFMNRAAAYRCFVCGTRKGTSTRRST 64
>L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical
protein ZK686.6 protein.
Length = 306
Score = 28.7 bits (61), Expect = 2.2
Identities = 25/70 (35%), Positives = 28/70 (40%)
Frame = -3
Query: 225 RGSRIVGRCYSGPN*CCSCRYPSHTGAQTSPGCRCLTGGRDAVFHRCSGCGTRASTSSEQ 46
R SRI +C S P CC R P Q C G A CSG T +
Sbjct: 12 RSSRIQ-KC-SSPQ-CCINRLPKKFQDQDIFFCS-RPGCSSACHFVCSGYYTIEQRHNAS 67
Query: 45 STTPECLCCR 16
+PECL CR
Sbjct: 68 QASPECLPCR 77
>Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical
protein F58E10.1b protein.
Length = 709
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -1
Query: 299 TPGLPRPSVLAGVGVVSITSA 237
TPG P+PSVL+ +G V+ TS+
Sbjct: 230 TPGAPQPSVLSRLGHVASTSS 250
>Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical
protein F58E10.1a protein.
Length = 694
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -1
Query: 299 TPGLPRPSVLAGVGVVSITSA 237
TPG P+PSVL+ +G V+ TS+
Sbjct: 215 TPGAPQPSVLSRLGHVASTSS 235
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 67 PSSTTAAPVEDG--IAPASETPAP 132
P + AAPV++ +APA ETPAP
Sbjct: 107 PDAPAAAPVQETPQVAPAPETPAP 130
>AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical
protein R02F11.3a protein.
Length = 467
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 44 DCSLDVLARVPQPLHRWKTASRPPVRHLHP 133
D DV+A +P P+ K P V+H+ P
Sbjct: 118 DDDADVIAAIPPPIPEEKAVVAPLVKHIKP 147
>Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical
protein ZK287.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Frame = -3
Query: 411 CLR---GGSFFSRCYA*CYRPQT--RIRAQIKPRPGAQLCRAYSRSAATECSCRC---WC 256
CLR G S C C + ++ KP G Q + + EC+CR +C
Sbjct: 79 CLRIKEGCSKLCACKQICKNKEAPKKLAKVAKPTSGCQCAKGKKQCVKKECACRTVYGFC 138
Query: 255 GLDHFC-GCCTRGS 217
C G CT G+
Sbjct: 139 SASCKCGGDCTNGA 152
>U64854-3|AAB18315.2| 304|Caenorhabditis elegans Hypothetical
protein K11C4.2 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 402 GGSFFSRCYA*CYRPQTRIRAQIK 331
GG +FS CY Y+P + R +++
Sbjct: 148 GGQYFSTCYLFVYKPHYKRRMELR 171
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 67 PSSTTAAPVEDG--IAPASETPAPRARLRPGMR 159
P + AAP+E+G AP + P+P L P +R
Sbjct: 529 PETVDAAPIEEGSDAAPEAPEPSPLELLDPELR 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,734
Number of Sequences: 27780
Number of extensions: 221380
Number of successful extensions: 650
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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