Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D18
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   0.80 
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   1.1  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   1.9  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    23   5.7  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    23   7.5  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    23   7.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   9.9  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    23   9.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    23   9.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -3

Query: 206 PRPL*FCPCSGSTPPTARCSPPVRW----PARRERRVLRPTAGPRDPGSRARPATRTLPP 39
           PRP    P   S PP    +PP+      PA+    V  P + P  P S   P    +PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP-SAVPPMPPKVPP 203

Query: 38  VVVSYYPM 15
             +S  P+
Sbjct: 204 PPLSQAPV 211


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -3

Query: 143 PVRWPARR---ERRVLRPTAGPR---DPGSRARPATRTLPPV 36
           P R+P++R   E   L P  G     +PG+R  PA   LPP+
Sbjct: 130 PDRYPSKRGFKESFALLPGGGNHFAYEPGTRENPAVPFLPPL 171


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
 Frame = -3

Query: 131 PARRERRVLRPTAGPRDPGSRARPATRTLPPVVV------SYYPMIVP 6
           P    R  + P   P D  S    +  TLPP  V      SYYP+  P
Sbjct: 464 PFSPPRNAMMPIPAPMDQFSTFHQSMATLPPGAVPTSIPQSYYPIYSP 511


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
          Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 77 GSRARPATRTLPPVVVSY--YPMIV 9
          G+R RP T TLP  +V +   PMI+
Sbjct: 11 GTRLRPLTLTLPKPLVEFGNKPMIL 35


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 173 STPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLP 42
           STPP    S P   PA     +  P+A         +P+T +LP
Sbjct: 251 STPPIPPLSEPKHSPATVNEHISPPSALTNPSTEELKPST-SLP 293


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -3

Query: 182 CSGSTPPTARCSPPVRWPARRERRVLRPTAGPRDPGSRARPATRTLPP 39
           CS +  P+   S  V W  + E R+    A  +DP    +   R + P
Sbjct: 116 CSIAKIPSEELSIKVIWDVKEESRLKDTVAYAKDPRFSKQRLLRMIVP 163


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 110  VLRPTAGPRDPGSRARPATRTLPPV--VVSYYPMIVP 6
            V  PTA    PG +A   +  +P V   +S  P +VP
Sbjct: 1271 VAAPTAQQIQPGKQASAVSSNVPAVSASISTPPAVVP 1307


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 98  TAGPRDPGSRARPATRTLPPVVVSYYP 18
           T     P S   PA + +PP+  S YP
Sbjct: 121 TKSTSQPPSNHLPAFQQIPPIHQSAYP 147


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 68  ARPATRTLPPVVVSYYPMI 12
           ++P+TRT PP V +  P++
Sbjct: 670 SKPSTRTSPPFVNNTKPIV 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,000
Number of Sequences: 5004
Number of extensions: 7324
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)