Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D17
(242 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 46 5e-07
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 46 7e-07
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 40 3e-05
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 39 1e-04
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 34 0.003
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.007
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 0.35
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 1.1
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 1.4
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 1.9
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 1.9
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 25 1.9
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 1.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 2.4
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 24 2.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 2.4
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 24 2.4
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 24 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 3.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 24 3.2
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 24 3.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 23 4.3
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 23 4.3
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 23 4.3
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 23 4.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 23 5.6
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 23 5.6
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 23 5.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 23 5.6
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 23 7.5
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 23 7.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 7.5
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 23 7.5
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 23 7.5
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 22 9.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 22 9.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 22 9.9
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 22 9.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 22 9.9
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 46.4 bits (105), Expect = 5e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Frame = +3
Query: 69 KKTETSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVENLD-CEEL 236
K+ E + E+E+VVEKVL R + G +YLLKW+GY + ++TW + C++L
Sbjct: 68 KEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQL 127
Query: 237 IK 242
I+
Sbjct: 128 IE 129
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 46.0 bits (104), Expect = 7e-07
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = +3
Query: 81 TSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVEN-LDCEELI 239
+ D +S+EEF VE +LD R K QY LKW+GY + ++TW E+ C ELI
Sbjct: 167 SEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 40.3 bits (90), Expect = 3e-05
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = +3
Query: 78 ETSDGSSEEE-FVVEKVLDKRTVKGKI-QYLLKWKGYKEDESTWEPVENL-DCEELIK 242
++++G ++ + + VE +L R K I +Y +KW GY ++TWEP +NL E+++K
Sbjct: 11 DSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 38.7 bits (86), Expect = 1e-04
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 99 EEEFVVEKVLDKRTVK-GKIQ-YLLKWKGYKEDESTWEPVENL 221
+EE+ VE+++D++ + G ++ Y ++W Y TWEP ENL
Sbjct: 5 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 33.9 bits (74), Expect = 0.003
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 66 DKKTETSDGSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWEPVE 215
D + E + EE +VE+++ T +GK +Y +KW+ D TWE +
Sbjct: 290 DIERERKNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340
Score = 27.1 bits (57), Expect = 0.35
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +3
Query: 63 KDKKTETSDGSSEE-EFVVEKVLDKRT--------VKGKIQYLLKWKGYKEDESTWEPVE 215
+D++ E + EE E +++ VL+ R K QYL+KW+ +TWE
Sbjct: 191 EDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYS 250
Query: 216 NL 221
L
Sbjct: 251 TL 252
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 32.7 bits (71), Expect = 0.007
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 60 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWE 206
+K++K E + + + +V K L+ G ++YL+KWK D TWE
Sbjct: 276 EKERKRENYEEYKQVDRIVAKHLNS---DGSVEYLVKWKQLLYDFCTWE 321
Score = 31.5 bits (68), Expect = 0.016
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +3
Query: 75 TETSDGSSEEEFVVEKVLDKRTVKGK--------IQYLLKWKGYKEDESTWEPVENL 221
TE S+ E+ ++ VLD R ++G ++L+KW + TWEP N+
Sbjct: 181 TEVSE-EPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 0.35
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 114 VEKVLDKRTVKGKIQYLLKWKGYKEDESTW 203
VE ++ ++ +K QY +KW G +TW
Sbjct: 822 VEALIGRQKLKKSFQYEIKWFGKPHKYNTW 851
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 1.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 21 FTVYHINYY-LEM-GKKDKKTETSDGSSEEEFVVEKVLDKRTVK 146
FT +HINYY + M G K +K + SS + L ++T++
Sbjct: 108 FTKHHINYYHIAMPGSKHRKNDCISSSSNPDISDVDDLVRKTLQ 151
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 48 LEMGKKDKKTETSDGSSEEEFVVEKV 125
LE KDKK E+ S +EE VE V
Sbjct: 35 LETSAKDKKHESPSMSEDEEGSVENV 60
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 1.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 93 SSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDE 194
SS E+ + E V D ++ KIQ ++W+ + E +
Sbjct: 205 SSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQ 238
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 1.9
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 60 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELI 239
K D+ E DG + +FV ++ K + + L+ +GY + + + +E+ D EE++
Sbjct: 428 KYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSD---QEIEDADEEEVL 484
Query: 240 K 242
+
Sbjct: 485 E 485
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 42 YYLEMGKKDKKTETSDGSSEEEFVVEKVLD 131
Y LEMG ++K + S S +F+V LD
Sbjct: 16 YELEMGPINEKLDRSLNSHLNQFIVHSSLD 45
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 24.6 bits (51), Expect = 1.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 180 YKEDESTWEPVENLDCEEL 236
Y++D++ +EP ENL+ +EL
Sbjct: 60 YQKDKNIYEPKENLEEKEL 78
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 129 RELFQQQTLLHLIHRWFQFFY-LFCPFLNNNLCDI 28
+ + Q LLH+I Q L PFLN+NL D+
Sbjct: 605 KSMHLQVQLLHIISSLCQSSSALILPFLNHNLPDV 639
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 210 LAPKCSHLLYNLSISINIVSFPSQYVYRELFQQQTLLHLIHRWFQF 73
L P H L N +++ + P + Q+ LL L RWF+F
Sbjct: 395 LTPTKCHSLLNRKLTVLTLLQPDSEQF--FSSQEELLRLGKRWFRF 438
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.2 bits (50), Expect = 2.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 216 SLLAPKCSHLLYNLSISINIVSFPSQYVYRELFQQQTLLHLIHRWFQF-FYL 64
S L +CS +LY L +N+V P Y Y+ + + L+ H Q FYL
Sbjct: 866 SSLQDECSDVLYLLMEFLNMVCSPKSY-YKLIPSFEQLIQDFHIQPQVAFYL 916
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 138 TVKGKIQYLLKWKGYKEDESTWEPVENLD 224
++K +L KWK S +PV+NLD
Sbjct: 195 SIKSLTTWLPKWKKNDFKTSNSQPVKNLD 223
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 108 TLLHLIHRWFQFFYLFCPFLN 46
T L + RWF FY F LN
Sbjct: 56 TKLEVPKRWFWHFYAFISLLN 76
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 150 KIQYLLKWKGYKEDESTWEPVENLDCEELI 239
K YLL + K DE WE ++ + C ++
Sbjct: 981 KNSYLLLFASAKPDEDFWESIDTM-CRAVV 1009
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 115 TTNSSSLDPSLVSVFLSFLPIS 50
TTNS S + FL +LPIS
Sbjct: 385 TTNSPLTPQSFTNSFLGYLPIS 406
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 106 SLLLKKFSINVL*RERYNIY*NGKVIKKMRAL 201
S L++ +SI ++ YNIY +G V KKM ++
Sbjct: 251 SCLVRVYSIGII----YNIYQSGFVNKKMESV 278
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 231 LHNQDSLLAPKCSHLLYNLSISINIVSFPSQY 136
L+ +++ + + S ++YN S I+ SFP +
Sbjct: 366 LYETETITSSEISSIIYNFSTPISGSSFPDGF 397
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 63 KDKKTETSD---GSSEEEF--VVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLD 224
+++K E D G E+E VV + R V I+Y W+ YK+ E+++ E +D
Sbjct: 46 EEEKQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEID 104
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 4.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 66 DKKTETSDG-SSEEEFVVEKVLDK-RTVKGKI 155
D ++ SD SSEEEFV EK + ++ K KI
Sbjct: 26 DTESSFSDADSSEEEFVEEKEASQVQSTKSKI 57
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 23.4 bits (48), Expect = 4.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 36 INYYLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYL 164
++++ E+GK K SDGS + F + + T + I L
Sbjct: 78 VSHFEEIGKTVKSERDSDGSGQISF-TDLTTNSSTTRSSISEL 119
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 72 KTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDES-TWEPVENLDCE 230
++ET+ S E+ F +EK + GK+ + + + TW + N E
Sbjct: 111 ESETNSESEEDNFQIEKAFKQSLNIGKVDSADENNNQRTNSPLTWFQLSNASAE 164
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 160 YCIFPFTVRLSRTFSTTNSSSLDPSLVSVFLSFLP 56
Y FP V + +S S DP + ++S LP
Sbjct: 236 YTFFPDFVDATGVYSVGEVFSYDPDTMCSYMSVLP 270
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 147 GKIQYLLKWKGYKED 191
G IQ+L+K KG+ ED
Sbjct: 306 GIIQFLVKEKGFNED 320
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 51 EMGKKDKKTETSDGSSEEEF-VVEKVLDKR 137
E + ++E+S SEEE VVEK +K+
Sbjct: 169 ESSSSESESESSSSESEEEEEVVEKTEEKK 198
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 204 PKCSHLLYNLSISINIVSF 148
P CS + + SI I ++SF
Sbjct: 153 PYCSSVPFEFSIEIGVISF 171
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 22.6 bits (46), Expect = 7.5
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 36 INYYLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVE 215
I + L +GK+ K + SD SS + + E + Y ++ GY DE ++ E
Sbjct: 359 IAFTLFVGKQSKNDD-SDFSSLCQRLDEISASCNNDYTTLLYQIRTFGYAVDEKHFKTNE 417
Query: 216 NLDC 227
L+C
Sbjct: 418 RLEC 421
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 161 ILYLSLHSTFIENFFNNK 108
+LYL S+F+EN N+
Sbjct: 692 LLYLETFSSFLENIITNE 709
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 22.6 bits (46), Expect = 7.5
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 42 YYLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGK--IQYLLK-WKGYKEDESTWEPV 212
YYLE KKD + E S E V +L + + G YLL+ W + +
Sbjct: 101 YYLEGFKKDLEEEGSPLLFNENNVDSALLSRLSTTGNNTFSYLLQSWSFLYQYKKRLPKD 160
Query: 213 ENLD 224
EN D
Sbjct: 161 ENQD 164
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 84 WFQFFYLFCPFLNNNL 37
W F++FC L+NNL
Sbjct: 318 WLFTFHVFCNQLSNNL 333
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 48 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKI 155
L+ K+K +ETS E VV+ + +RT KI
Sbjct: 587 LKAPPKEKSSETSKEYLNEPSVVKDFVVERTPSDKI 622
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 148 PFTVRLSRTFSTTNSSSLD 92
P T LS T ST ++ SLD
Sbjct: 244 PLTETLSSTISTLSNDSLD 262
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -2
Query: 196 LSSSL*PFHFNKYCIFPFTVRLSRTFSTTNSSSLDPSLVSVFLSFLP 56
LSS + + P+T+ LS F + SL P S + P
Sbjct: 139 LSSEYAKWQIRMGAVPPYTITLSHIFGKLDVDSLPPITESKAIELSP 185
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 213 LLAPKCSHLLYNLSI--SINIVSFPSQYVYRELFQQQTL 103
LLA +L L I S+N+ +FP+ V + L T+
Sbjct: 46 LLASSVCCILTRLIIGPSLNVFTFPTDQVLKSLLHAATI 84
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 45 YLEMGKKDKKTETSDGSSEEEFVVEKVLDKRT 140
+++ G D E D + E+FV ++ D+R+
Sbjct: 886 FIDNGLLDFLDEKFDNTPREDFVAVEISDQRS 917
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,258
Number of Sequences: 5004
Number of extensions: 16657
Number of successful extensions: 102
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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