Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D15
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    24   2.3  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    23   4.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    23   7.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    22   9.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    22   9.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    22   9.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    22   9.4  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    22   9.4  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 188 CCLTNLISIVLL 223
           CC+TNL+S+ +L
Sbjct: 673 CCITNLVSLAIL 684


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 37   LFSILSYFG*INDHISILYFDNYFLIRLATCMLCGL*TLDINQENV 174
            LF  L Y G I D + I  +    L  LA    CG+   D+  EN+
Sbjct: 1206 LFEFLRY-GRIEDELVIQVYVLQLLEGLAYIHSCGVSHQDVKPENI 1250


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 166 ENVFVQKLLSNELDFNCSTYV 228
           E++F QKL +N+ DF+  TY+
Sbjct: 487 ESIF-QKLWANKPDFDSETYM 506


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 31  YKLFSILSYFG*INDHISILYFDNY 105
           + L++++S  G +  HIS+    NY
Sbjct: 466 FALYALISQTGVLFSHISLTLISNY 490


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 152 LILIRKMCLFKNCCLTNLISIVLLM 226
           L L+R   L  N CL  L  +V L+
Sbjct: 292 LFLVRLSSLIPNLCLKQLTQLVKLL 316


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 109 ESNYQSIILKYDHLFIQNT 53
           +SN +S+ILK   L I+NT
Sbjct: 844 KSNLRSVILKVVSLAIENT 862


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 19  HSLIYKLFSILSYFG*INDHISIL-YFDNYFLIRLATCML 135
           H +++ +FS  SY   + D ISI  YF    L  +    L
Sbjct: 164 HGILFMIFSAQSYKPLLYDKISIYGYFITVVLFLMTVASL 203


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 198 VRQQFLNKHIFLINIKCLESTKHTRR*SNEKVI 100
           V++QF +   FL N   ++  KHT++  + K +
Sbjct: 28  VKKQFFSTGAFLSNGGNIDLNKHTQKNIDSKYV 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,718
Number of Sequences: 5004
Number of extensions: 15077
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)