Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D15
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical p...    27   2.4  
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z81047-10|CAB02836.1|  215|Caenorhabditis elegans Hypothetical p...    25   9.5  
AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine r...    25   9.5  
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical
           protein F14F8.11 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 106 FLIRLATCMLCGL*TLDINQENVFVQKLLSNELDFNCST 222
           FLI +A C L  + ++ +++  +F + LLS  +D  C T
Sbjct: 72  FLIGIAICDLVRMISIIVSKSPIFYRVLLSLFIDSTCFT 110


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.4 protein.
          Length = 1100

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 210 EIKFVRQQFLNKHIFLINIK 151
           ++ F R+QFL   IFL+N++
Sbjct: 630 QLVFFRKQFLQNRIFLLNLQ 649


>Z81047-10|CAB02836.1|  215|Caenorhabditis elegans Hypothetical
           protein C41G6.12 protein.
          Length = 215

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 216 TIEIKFVRQQFLNKHIFLIN 157
           T+ + FV  QF+N+H+ L+N
Sbjct: 10  TLILYFVAIQFINRHLCLLN 29


>AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine
           receptor, class i protein46 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +1

Query: 31  YKLFSILSYFG*INDHISILYFDNYFLIRLATCMLCGL*TLDINQENVFVQKLLSNELDF 210
           Y LFS+      ++ H+SIL    YFL   A  + C    + +    ++   L++ E  F
Sbjct: 62  YFLFSLQVSSLVMDFHLSILCQPIYFLS--AYTVNC----IGVAAPVIWCNSLMALEQSF 115

Query: 211 NCSTYVC 231
           NC  Y+C
Sbjct: 116 NCVQYLC 122


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 22  SLIYKLFSILSYFG*INDHISILYFDNYFLIRLATCMLCGL*TLDINQEN--VFVQKLLS 195
           SL    F+I  Y+G  N + +         ++ ATC++CG+    +   +  +F+  L+ 
Sbjct: 122 SLSILAFTIERYYGICNPYKA----RTMCTVKRATCIICGIWIFSMLYHSYWLFLATLIK 177

Query: 196 NELDFNCS 219
           +++  +CS
Sbjct: 178 DDIGTSCS 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,958,655
Number of Sequences: 27780
Number of extensions: 81149
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)