Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D14
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    24   3.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    23   4.1  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    23   7.2  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    23   7.2  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    23   7.2  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    22   9.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    22   9.6  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    22   9.6  

>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 83  HWFTAIYIRHSLNSTKFNDEHNVL 154
           H F+A +IR  + ST  +D+ NVL
Sbjct: 160 HSFSATFIRAPVASTILSDDINVL 183


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 46  SWIINILVYFKVSLVHCHLH 105
           SW++NI  Y    +   H+H
Sbjct: 386 SWVLNITPYLTAFIDEAHIH 405


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 77  KYHWFTAIYIRHSLNSTKFNDEHNV 151
           K +W   +Y R   N T+FNDE  V
Sbjct: 12  KQYWDN-VYEREVSNFTEFNDEGEV 35


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 203 FIYEHSAIHDHKTFIHLKHYVHH 135
           F+YE   +H H +F++   Y+H+
Sbjct: 207 FLYE---LHGHTSFVYSLTYIHN 226


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 17  YLTYFNSS*EVGLLIFLCILKYHWFTAIYIRHSLNSTKFNDE 142
           Y+ Y  S+   GLL+ LC+   H   +   R  L +T   +E
Sbjct: 246 YMMYIVSACLQGLLLMLCMFYLHKEKSRRKREELQATLQEEE 287


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 139 IIKFSRIQTVPYVNGSEP 86
           +IK SRIQTVP + G  P
Sbjct: 222 VIK-SRIQTVPRIAGQVP 238


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 20   LTYFNSS*EVGLLIFLCILKYHWFTAIYIRH----SLNSTKFNDEHN 148
            + YF++  E+ LL+ L     HW +    ++     L + +F+D+ N
Sbjct: 2233 MMYFSNPQEIALLLSLPSSNNHWTSPFLAQNVGIVHLKAFEFDDDDN 2279


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 104  IRHSLNSTKFNDEHNVLNE 160
            IRH LN++KF+ +   L E
Sbjct: 1211 IRHLLNNSKFDKQMEALPE 1229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,043
Number of Sequences: 5004
Number of extensions: 13856
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)