Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D14
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     29   0.67 
04_04_0556 + 26221296-26221758,26223097-26223260,26223337-262234...    26   4.7  

>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -1

Query: 139 IIKFSRIQTVPYVNGSEPMIL*NTQEY**SNFLGTV 32
           II +S+++++   +G + M+L  TQ+Y  +N LGT+
Sbjct: 527 IIVWSQLRSILRCSGPQSMVLVTTQKYSIANLLGTM 562


>04_04_0556 +
           26221296-26221758,26223097-26223260,26223337-26223434,
           26224031-26224220,26224321-26225424
          Length = 672

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 202 LFMNTPLYTITKLLFI*NIMFIIKFSRIQTVPYVNGSEPMI 80
           L +   LY   K+L      F++   +  T+P  N   PM+
Sbjct: 312 LILGDGLYNFVKVLIRTTAGFVVMMKKNSTLPVSNNGSPMV 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,760,171
Number of Sequences: 37544
Number of extensions: 66941
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)