Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D14
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    25   7.3  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 56  LIFLCILKYHWFTAI--YIRHSLNSTKFNDEH 145
           LIF+C++ +HW   +  YI    N T    EH
Sbjct: 249 LIFICVVIFHWNGCLYFYISKVYNYTTARLEH 280


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  TYFNSS*EVGLLIFLCILKYHWFTAIYIRHSL 118
           T F  + ++ LL   CI+ +HW   +Y   SL
Sbjct: 167 TTFPRAFKIILLAVSCIVLFHWNACLYFLFSL 198


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 59  IFLCILKYHWFTAIYIRHSLNSTKFNDEHNVLNE*KFCDRV*RSVHK*IMIIII 220
           +F  + K HW  A + + ++ S  F  E+N++    F D + +  ++ I I++I
Sbjct: 27  LFTVLRKIHWHRADFFKQNILSHYFIPENNLIYP-NFLDLILKMKYR-IWILLI 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,668,433
Number of Sequences: 27780
Number of extensions: 75155
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)