Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D13
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455...    27   2.1  
04_01_0139 + 1560962-1561094,1561205-1561416,1561481-1561706,156...    25   6.4  
02_01_0404 - 2945611-2948802                                           25   6.4  

>07_03_0272 -
           16143201-16144937,16145346-16145351,16145406-16145535,
           16145613-16145773,16146608-16146725,16147328-16147441,
           16149378-16149469,16149906-16149986,16150168-16150473
          Length = 914

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 187 KNITSLFCTAKAHLNRLSTCYRRLVSYRIEIDWNT 83
           +N+    C + +H N LS CY  ++S+     W++
Sbjct: 128 ENLGLGMCCSSSHANSLSKCYVNVISFLKYSTWSS 162


>04_01_0139 +
           1560962-1561094,1561205-1561416,1561481-1561706,
           1561782-1562029,1562374-1562392,1562747-1562886,
           1563134-1563361
          Length = 401

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 24  VGHNSRGRVTKPCCY 68
           +G  S GR++ PCCY
Sbjct: 381 IGIGSAGRISCPCCY 395


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 199 NLY*KNITSLFCTAKAHLNRLSTCYRRL 116
           N +  +I S FC++ A L  L+ CY  L
Sbjct: 196 NSFTGHIPSNFCSSSASLTALALCYNHL 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,227,534
Number of Sequences: 37544
Number of extensions: 97470
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)