Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D13
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   0.58 
AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z68303-2|CAA92641.2|  428|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    25   9.4  

>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 69  RNNRASSLALGCYDPPNPIAPS 4
           RN RA S+++G YDPP   A S
Sbjct: 81  RNVRAGSVSIGAYDPPTSRADS 102


>AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical
           protein Y6E2A.2 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  VDLYTITN*SPVASREPVQVCFRS--TKETCDIFLV*VPVAELITLSLFGIK 241
           + LY +++ + + +RE     FR+   +     F +  PV+ +I L LFGIK
Sbjct: 230 IHLYRLSSIAGLDNRELQNQLFRTLVVQTVIPFFFMYFPVSCMILLPLFGIK 281


>Z68303-2|CAA92641.2|  428|Caenorhabditis elegans Hypothetical
           protein ZK809.1 protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 21  WVGHNSRGRVTKPCCYGSDLIVFQ 92
           W  H+SR R T   CY  + I+ Q
Sbjct: 153 WQSHSSRNRHTDYKCYDHNRIIVQ 176


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 205  YRNLY*KNITSLFCTAKAHLNRLSTCYRRLVSY 107
            Y+  +  N TS+F T        +  YRRL  Y
Sbjct: 2133 YQQFFTANSTSIFATTSKTSTTYAQAYRRLSQY 2165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,215,300
Number of Sequences: 27780
Number of extensions: 80184
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)