Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D12
(251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 5e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 4e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.018
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.29
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 0.66
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 2.0
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 2.0
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 24 2.7
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 24 3.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 3.5
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 24 3.5
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 4.7
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 23 4.7
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 23 4.7
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 6.2
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 23 6.2
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 23 6.2
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 23 8.2
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 96.3 bits (229), Expect = 5e-22
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +2
Query: 29 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 205
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 206 LPPGLQVKEV 235
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 90.2 bits (214), Expect = 4e-20
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +2
Query: 29 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 205
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 206 LPPGLQVKEV 235
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.018
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 89 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 238
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 0.29
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 145 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 237
+V H + HG+G GR E F +R+PG SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 0.66
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 87 ASFLRAFNKKSLISLISRGMMKCVMSPSC 1
+S L KK +++ SRG++ V SP C
Sbjct: 491 SSMLTTSCKKEILAAASRGLLNSVTSPVC 519
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 29 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 148
+ RE + LKA RK+A+ V+ + P K+++ SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 24.6 bits (51), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 5 EGDITHFIMPREIKDIKDFLLKARRKDAKS 94
+ D+ + R++KD D + K RKD KS
Sbjct: 417 QSDLKKYEKSRKLKDYIDDIRKGYRKDLKS 446
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -3
Query: 195 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 46
++S++ V+ +V+ N+ R LN AS L A+NKKS IS
Sbjct: 36 TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 23.8 bits (49), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 121 CKVQGPLLSVPVHPRHHGQGEG 186
CKV G ++ + P HH G G
Sbjct: 76 CKVYGGSVNRGMRPSHHRDGSG 97
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 44 KDIKDFLLKARRKDAKSVKIKKNPEN 121
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 23.8 bits (49), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 121 CKVQGPLLSVPVHPRHHGQGEG 186
CKV G ++ + P HH G G
Sbjct: 76 CKVYGGSVNRGMRPSHHRDGSG 97
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 35 REIKDIKDFLLKARRKD 85
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 23.4 bits (48), Expect = 4.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 82 FPTRFQQKIFDILDFTRHDEVCNVALV 2
+PTR IFD L F H NVA+V
Sbjct: 491 YPTRPSASIFDNLSFDIHPGT-NVAIV 516
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 23.4 bits (48), Expect = 4.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 65 LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 238
+K + + K +K+K P+ + K SRF + K + SL L +VK
Sbjct: 1 MKTQTTNQKQLKVKHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVK 58
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.0 bits (47), Expect = 6.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +2
Query: 59 FLLKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 223
F+ K R+ KSVKIK K P+ +K + + TDK K K +
Sbjct: 891 FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949
Query: 224 VKEVK 238
V+ +K
Sbjct: 950 VQAIK 954
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 128 FKVRCSRFLYTLVITDKEKAEKLK 199
FK+ F +LV+TD +K K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.0 bits (47), Expect = 6.2
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 124 KVQGPLLSVPVHPRHHG--QGEGRETETEFTSRSPG*GSEVND 246
++ GPL +V +HPR G G+E + S +P S +++
Sbjct: 125 QLHGPLSAVELHPRIPGIIAAGGKENDVCLYSCNPTCKSNIDE 167
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 22.6 bits (46), Expect = 8.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 133 GPLLSVPVHPRHHGQGEGRE 192
GP+ ++ VHP+ G G E
Sbjct: 289 GPINTIAVHPKGTGYASGGE 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,567
Number of Sequences: 5004
Number of extensions: 13348
Number of successful extensions: 46
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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