Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D12
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471    105   7e-24
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528    103   2e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...   101   8e-23
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949...    26   3.7  
08_02_1440 - 27113396-27113418,27113976-27114102                       25   6.4  
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595     25   8.4  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =  105 bits (251), Expect = 7e-24
 Identities = 48/69 (69%), Positives = 60/69 (86%)
 Frame = +2

Query: 29  MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 208
           MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 209 PPGLQVKEV 235
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score =  103 bits (247), Expect = 2e-23
 Identities = 47/69 (68%), Positives = 59/69 (85%)
 Frame = +2

Query: 29  MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 208
           MP++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 209 PPGLQVKEV 235
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score =  101 bits (242), Expect = 8e-23
 Identities = 46/68 (67%), Positives = 58/68 (85%)
 Frame = +2

Query: 32  PREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 211
           P++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 212 PGLQVKEV 235
           PGL V+EV
Sbjct: 92  PGLTVQEV 99


>07_01_1069 -
           9493001-9493176,9493269-9493300,9493405-9493499,
           9493623-9493898,9493976-9494039,9498048-9498113,
           9498283-9498413,9499722-9499859,9499964-9500079,
           9500166-9500331,9500435-9500548,9500609-9500692,
           9500995-9501073,9501134-9501337,9501999-9502096,
           9502187-9502284,9502359-9502495,9502606-9502824,
           9503541-9503743,9503856-9504005
          Length = 881

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 8   GDITHFIMPRE-IKDIKDFLLKARRKDAKSVKIKKNPENVKFKV 136
           G +  F++  + ++DI+D      +K  K++++K    N++FK+
Sbjct: 247 GPVFDFLLTNQNVRDIRDIDWPRAKKMLKNLRVKAIHNNMEFKI 290


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 179 EKAEKLKQSLPPGLQ 223
           E A KLKQ LPPG Q
Sbjct: 25  ENANKLKQFLPPGSQ 39


>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
          Length = 514

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +2

Query: 26  IMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQS 205
           +MP +IKD++   +K  R     V++ K+ +N   K   S  +  + I D + ++  K++
Sbjct: 352 MMPVQIKDVQHQQIKETRSPVMPVQV-KDAQNQLLKGSLSPVI-PVQIKDVQ-SQPPKEA 408

Query: 206 LPPGL--QVKEVK 238
           L P +  Q+K+V+
Sbjct: 409 LSPAIPVQIKDVQ 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,877,440
Number of Sequences: 37544
Number of extensions: 87504
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)