Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_D12
(251 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 124 1e-29
AC006827-4|AAF60881.1| 579|Caenorhabditis elegans Hypothetical ... 31 0.14
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 29 0.58
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 28 1.0
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 28 1.0
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 28 1.0
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 27 1.8
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 2.3
Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical pr... 26 4.1
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 26 4.1
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 26 4.1
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 25 5.4
Z81146-7|CAB03523.2| 517|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z70210-4|CAA94151.1| 142|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical p... 25 9.4
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 25 9.4
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 25 9.4
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 25 9.4
U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprote... 25 9.4
L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro ribonucleopr... 25 9.4
AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 124 bits (298), Expect = 1e-29
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = +2
Query: 29 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 208
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 209 PPGLQVKEVK 238
PPG+QVKE+K
Sbjct: 61 PPGIQVKELK 70
>AC006827-4|AAF60881.1| 579|Caenorhabditis elegans Hypothetical
protein Y81B9A.1 protein.
Length = 579
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 11 DITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVR--CSRFLYTLVIT 172
+I+HF M + I+D+K + + R ++ K++ N EN++ +R SRF+Y +T
Sbjct: 419 NISHFQMAQYIEDLKSYGKRLRGEEWTLCKLEYNSIENIRSPLRPEGSRFIYLPTVT 475
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 28.7 bits (61), Expect = 0.58
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -2
Query: 199 FQFLCLLLVRDDEGVQEPRAADXXXXXXXXXXXXYRFGIFPTRFQQKIFDILDFTRHDEV 20
F + LLV+ D +++ R D FG+FP R K+ LDFT DE
Sbjct: 258 FIIIAYLLVKFDN-IKDTR--DNLGRSALMMAADKSFGLFPIRIFTKVDAYLDFT-DDEK 313
Query: 19 CNVAL 5
N AL
Sbjct: 314 GNTAL 318
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 14 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 130
IT F + IKD D++LK K KSVK+K + E + F
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 14 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 130
IT F + IKD D++LK K KSVK+K + E + F
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 14 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 130
IT F + IKD D++LK K KSVK+K + E + F
Sbjct: 145 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 88 GIFPTRFQQKIFDILDFTRHDEVCNVAL 5
GI+ TRF K+F L +H+++ N AL
Sbjct: 65 GIYETRF--KVFTALSMEKHEDIYNKAL 90
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 59 FLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 169
F K+R+ + K K++KN ENV+ R + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559
>Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical
protein F26F2.6 protein.
Length = 611
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 40 NQGYQRFFVESA*ERCQIGKDKEEP*ECKVQGPLLSVPVH 159
N+G +V+ +R QI KD+ +P CKV PL H
Sbjct: 570 NEGDDCGYVQLVPDRMQI-KDEVQPFSCKVPRPLKGYICH 608
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 155 YTLVITDKEKAEKLKQSLPPGLQVKEVK 238
+T V+ K EKL + P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 155 YTLVITDKEKAEKLKQSLPPGLQVKEVK 238
+T V+ K EKL + P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +2
Query: 2 HEGDITHFIMPREIKDIKDFLLKARRKDAKSVK-------IKKNPENVKFKVRCSRFLYT 160
HE T FI+ + D KD + R + + K +KK+ E K + LYT
Sbjct: 99 HEKKQTDFILEDYVFDEKDTVYSVCRLNTVTSKMLVSEKVVKKDSEKKDEKDLEKKILYT 158
Query: 161 LVITDKEK 184
+++T ++K
Sbjct: 159 MILTYRKK 166
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +2
Query: 2 HEGDITHFIMPREIKDIKDFLLKARRKDAKSVK-------IKKNPENVKFKVRCSRFLYT 160
HE T FI+ + D KD + R + + K +KK+ E K + LYT
Sbjct: 99 HEKKQTDFILEDYVFDEKDTVYSVCRLNTVTSKMLVSEKVVKKDSEKKDEKDLEKKILYT 158
Query: 161 LVITDKEK 184
+++T ++K
Sbjct: 159 MILTYRKK 166
>Z81146-7|CAB03523.2| 517|Caenorhabditis elegans Hypothetical
protein K10D11.4 protein.
Length = 517
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 241 SLHFLNLETWR*TLFQFLCLLLVRDDEG 158
S HF+ +ET TL++FL +L D G
Sbjct: 409 SFHFIGVETKNSTLYKFLYRVLEADLAG 436
>Z70210-4|CAA94151.1| 142|Caenorhabditis elegans Hypothetical
protein K08H2.4 protein.
Length = 142
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 63 KKSLISLISRGMMKCVMSPSC 1
KK I + + G+ KCV SP+C
Sbjct: 89 KKGEIVIPTGGLAKCVCSPNC 109
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 155 YTLVITDKEKAEKLKQSLPP 214
Y + IT K AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318
>Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -3
Query: 231 SLTWRPGGKLCFSFSA--FSLSVMTRVYRNREQRTLNXXXXXXXXXFTDLASFLRAFNKK 58
SLTW P K+C + A + V R L+ + S A
Sbjct: 444 SLTWEPNQKICDALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSCREAATGM 503
Query: 57 SLISLISRGMMKCV 16
SLI+L + ++CV
Sbjct: 504 SLINLHNEAEVRCV 517
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
protein D2085.1 protein.
Length = 2198
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 65 LKARRKDA-KSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGL 220
LKA R++ ++V I N V+ + F Y L IT + + +K+ P G+
Sbjct: 417 LKALREEGIRTVLINPNIATVQTSKGFADFTYFLPITKEYVTDVIKKERPTGI 469
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 38 EIKDIKDFLLKARRKDAKSVKIKKNPEN 121
E KD ++ D S KIKK+PEN
Sbjct: 732 EDDSFKDTSNRSDNTDGSSKKIKKSPEN 759
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 38 EIKDIKDFLLKARRKDAKSVKIKKNPENVKFK 133
+I D+ + LLK +KD K K +K E + K
Sbjct: 166 DIGDVDEELLKKIKKDKKKAKKEKKREKKRAK 197
>U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprotein
Ro autoantigenhomolog protein.
Length = 643
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -3
Query: 231 SLTWRPGGKLCFSFSA--FSLSVMTRVYRNREQRTLNXXXXXXXXXFTDLASFLRAFNKK 58
SLTW P K+C + A + V R L+ + S A
Sbjct: 444 SLTWEPNQKICDALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSCREAATGM 503
Query: 57 SLISLISRGMMKCV 16
SLI+L + ++CV
Sbjct: 504 SLINLHNEAEVRCV 517
>L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro
ribonucleoprotein autoantigen protein.
Length = 643
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -3
Query: 231 SLTWRPGGKLCFSFSA--FSLSVMTRVYRNREQRTLNXXXXXXXXXFTDLASFLRAFNKK 58
SLTW P K+C + A + V R L+ + S A
Sbjct: 444 SLTWEPNQKICDALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSCREAATGM 503
Query: 57 SLISLISRGMMKCV 16
SLI+L + ++CV
Sbjct: 504 SLINLHNEAEVRCV 517
>AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -3
Query: 231 SLTWRPGGKLCFSFSA--FSLSVMTRVYRNREQRTLNXXXXXXXXXFTDLASFLRAFNKK 58
SLTW P K+C + A + V R L+ + S A
Sbjct: 444 SLTWEPNQKICDALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSSSPLSCREAATGM 503
Query: 57 SLISLISRGMMKCV 16
SLI+L + ++CV
Sbjct: 504 SLINLHNEAEVRCV 517
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,998,550
Number of Sequences: 27780
Number of extensions: 77997
Number of successful extensions: 291
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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