Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D09
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   0.78 
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   1.8  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   1.8  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    24   3.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   4.1  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    23   5.5  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   7.2  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   7.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    23   7.2  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   7.2  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    22   9.6  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    22   9.6  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    22   9.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   9.6  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 74  IGHV-HSKSLLNLSCKQIKDFVNGHKYRRQLLAKGQV 181
           I H+ H KS L+    ++   +N H +R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 32  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 142
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 129 ISSTDTSIGDNYW 167
           I+  DT+ GDNYW
Sbjct: 229 ITQCDTATGDNYW 241


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 219 TIYFLPVAAGCPDT*PLASNCLLYL 145
           T + +PV A   D  P+  NCL+Y+
Sbjct: 110 TAHSVPVYAHTGDEIPVLENCLVYV 134


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 144  CPLTKSLICLHDKFSRDLLWT 82
            CP ++    L  +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 56  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGH 145
           L+++V I   H +S L    K IKDF N H
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPH 901


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 94  LTMDVSNTYDHCQNKKRAYGHCSVV 20
           L  D  +    C N  R YGH S++
Sbjct: 316 LETDSPDMITECLNAVRKYGHVSII 340


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 105 TCHANKSKISSTDTSIGD 158
           +CHA KS  SST TS  D
Sbjct: 166 SCHAAKSGPSSTITSKSD 183


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 209 SFQLQQDVLIPDP*PVIVSYTC 144
           +FQL+  VL PD   + +S+TC
Sbjct: 754 NFQLRISVLGPDSDQLPISHTC 775


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 3   YRSW*HTTEQWPYARFLFWQWSY 71
           Y  W H+ +  PY   + WQ +Y
Sbjct: 141 YCIWSHSKKMLPYQALVNWQNAY 163


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 120 CLHDKFSRDLLWTCPIHTTIAK 55
           C  +    DL++TC I  T+ K
Sbjct: 358 CFAENVQGDLIFTCEISLTVLK 379


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 52  YFGNGRMYWTRP 87
           YFG G  YW  P
Sbjct: 712 YFGTGENYWRGP 723


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 149 YRRQLLAKGQVSGHP 193
           ++RQ LAKGQ  G P
Sbjct: 237 FQRQKLAKGQKIGQP 251


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 86  HSKSLLNLSCKQIKDFVNGHKYRRQLLAKGQVSGHPAATGRKYM 217
           H+ S+LN    ++K   +  +  R  L  G ++G+P A  RK++
Sbjct: 176 HAFSILN-DLDRLKQIYS--RVNRLPLGAGALAGNPFAVDRKFL 216


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 70   YDHCQNKKRAYGHCSVV 20
            Y H QN ++ +G CS V
Sbjct: 1248 YAHSQNAEKIFGICSKV 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,477
Number of Sequences: 5004
Number of extensions: 16164
Number of successful extensions: 48
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)