Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D09
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0263 - 27257150-27259213                                         28   1.2  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    27   1.6  
07_01_0330 + 2319014-2319532                                           26   4.7  
01_04_0115 - 16154943-16155335,16155422-16155602,16156188-16156258     26   4.7  
08_02_0218 - 14405739-14406096,14406322-14406326                       25   8.3  
07_03_0051 - 12831167-12832188,12832245-12832512                       25   8.3  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    25   8.3  

>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 69  YVLDTSIVSLY*TCHANKSKISSTDTSIG 155
           Y+L+T IV+LY  C A +S +++   S G
Sbjct: 168 YILETCIVNLYTRCGAYQSAVATLQNSKG 196


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 72  VLDTSIVSLY*TCHANKSKISSTDTSIGDNYWLRVRYQD 188
           + + S   +  T HA KS  + T   IG+N+W  V  QD
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQD 394


>07_01_0330 + 2319014-2319532
          Length = 172

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 7/31 (22%), Positives = 22/31 (70%)
 Frame = +2

Query: 50  LILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 142
           ++  +++    ++ KSLL+++C+++ D ++G
Sbjct: 108 VLFKLILAANFLNIKSLLDMTCQRVADMMSG 138


>01_04_0115 - 16154943-16155335,16155422-16155602,16156188-16156258
          Length = 214

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 NQRFRQRTQV*ETITG*GSGIRTSCCNWKE 210
           + RFRQ  QV +  +     +   CC+WKE
Sbjct: 120 SSRFRQVKQVKDRFSKIKKKVGNFCCSWKE 149


>08_02_0218 - 14405739-14406096,14406322-14406326
          Length = 120

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 219 TIYFLPVAAGCPDT*PLASNCLLYLCP 139
           T Y LP++ G PD  PL+    L+  P
Sbjct: 30  TNYALPLSVGAPDLIPLSLTSSLFSLP 56


>07_03_0051 - 12831167-12832188,12832245-12832512
          Length = 429

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 218 PYISFQLQQDVLIPDP*PVIVSYTCVR*RNL*FVCMTSLVETYY 87
           P +  +L +   +PDP  +I SY  +    +   C T+ V+T Y
Sbjct: 56  PELKEKLTRLCTVPDPNLIICSYKYIYSTIIELACKTTTVKTRY 99


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 31  NGRTRASYFGNGRMYWT 81
           +GR    YFG G MYW+
Sbjct: 798 SGRDINQYFGGGVMYWS 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,303,857
Number of Sequences: 37544
Number of extensions: 107656
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)