Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D08
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   2.7  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    23   6.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   8.3  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 5   LARGQAVTVCPYKIKKITSGLR*NAQNQDIQILKCSDSPCKKHI 136
           L  G+  T  PY+  K+T+ L+ +       ++  + SP K+H+
Sbjct: 748 LGSGKEGTYIPYRNSKLTNLLQYSLGGNSKTLMFVNISPLKQHV 791


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 69  RKPLVIFLILYGHTVTA 19
           R P +IF+++ GHT ++
Sbjct: 92  RMPWIIFIVILGHTFSS 108


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 105  NAVIVHAKSISFISLQKNLTKTF 173
            N   +H KS SF +LQ+N  + F
Sbjct: 1508 NFSYIHTKSSSFTNLQRNDFRQF 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,027
Number of Sequences: 5004
Number of extensions: 19814
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)