Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D08
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   3.0  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    25   9.0  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    25   9.0  
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877     25   9.0  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 41   KIKKITSGLR*NAQNQDIQILKC 109
            + K + S +R NA  +DIQIL C
Sbjct: 3797 EFKNVESDIRSNADQKDIQILHC 3819


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 209 LQEFMNNNCVKNKGFRQIFL*RNKRYAFCMDYHCISRSECLDFVHFSVNR 60
           L  F   +C+++   RQ+FL       F     CI  +  +D+VHFS+ R
Sbjct: 252 LDVFQVYSCLRSFS-RQLFLSPFLLETFVAALRCIYVNPLIDWVHFSLLR 300


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 75  MHKIKTFRS*NAVIVHAKSISFISLQKNLTKTFI 176
           M K+  +R    +++H K  S+    +N  +TF+
Sbjct: 770 MKKLDLWRLPEVLVIHLKRFSYTQFTRNKLETFV 803


>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
          Length = 446

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 174 IFDAIIIHKLLQTIRHY*YGHYASSDTTSD 263
           +FD + +HK+L        GH AS D  S+
Sbjct: 175 VFDEMWVHKMLAIAASVEEGHSASKDKQSE 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,701,018
Number of Sequences: 37544
Number of extensions: 104776
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)