Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D08
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 42  LYGHTVTAWP 13
           LYGH V  WP
Sbjct: 277 LYGHGVCKWP 286


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 KHIFYFFTEKFDENLY 175
           K  +YFFT++   NL+
Sbjct: 473 KVYYYFFTQRTSTNLW 488


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 146 RNKRYAFCMDYHCISRSECLDF 81
           R++++    + HC +   C DF
Sbjct: 731 RSEQFLCRYEAHCFALCHCCDF 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,785
Number of Sequences: 438
Number of extensions: 1221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)