Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D05
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   4.2  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    23   7.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    23   7.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    23   7.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    23   7.3  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    23   7.3  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    23   7.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    22   9.7  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 136 NVDTKNQHLWKSMFNLSKFCYYFYRNTLIYF 44
           N + KN ++++    +S   +YF+ +   YF
Sbjct: 212 NNNKKNSYVFRLFDRVSSSTFYFFNSLFAYF 242


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 187 KRETTD-VDPRAHHFLATNVDTKNQHLWKS 101
           KR+  D +DP+A  FL  +    N   W++
Sbjct: 132 KRKFLDTLDPKAREFLKLSSSISNSRSWEN 161


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 196 PHTKRETTDVDPRAHHFLATNVDTKNQHLWKSMFN 92
           P+T+  TT     + +F   N D K   L +  FN
Sbjct: 711 PNTENVTTTAPQFSFNFTKPNTDAKTNLLPEKTFN 745


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 120 INTYGNQCS 94
           +NTYGN+CS
Sbjct: 268 LNTYGNRCS 276


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 130 DTKNQHLWKSMFNLSKF 80
           DT+NQ LW S F+   F
Sbjct: 382 DTQNQLLWPSTFDDDNF 398


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 609

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 75 IIFTEIL*FTFKTSIHHVHVSDP 7
          ++F     FTF TSI  V VS+P
Sbjct: 1  MLFLRFFIFTFFTSIFTVVVSEP 23


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -3

Query: 163 PRAHHFLATNVD--TKNQHLWKSMFNL 89
           P +   LA  VD  T N H W+S F L
Sbjct: 536 PSSGKILADGVDISTYNVHQWRSHFGL 562


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 159 EPTIFLLLMSTLRINTYGNQCSIYQSFVII 70
           EPTI L      R+N+  N CS+ Q F +I
Sbjct: 490 EPTIDL----RRRLNSLVNACSLIQPFKLI 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,155
Number of Sequences: 5004
Number of extensions: 10155
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)