Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D05
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    28   1.2  
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052...    27   2.8  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    25   8.4  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 145 LATNVDTKNQHLWKSMFNLSKFC 77
           LAT++D +N+HL KS+ NL K C
Sbjct: 573 LATSIDQQNKHL-KSVENLCKSC 594


>02_03_0135 -
           15602404-15602850,15603332-15603588,15605095-15605200,
           15605500-15605630,15606159-15606223,15606345-15606409,
           15606560-15606955
          Length = 488

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 182 GDHRRRPESPPFSC 141
           G+ RR PE+PP+ C
Sbjct: 83  GERRRNPEAPPYPC 96


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 160 RAHHFLATNVDTKNQHLWKSMFNLSKFC 77
           R  H    N+D+ + HLW+      K C
Sbjct: 501 RPQHASLNNIDSHDLHLWRKQDQRGKDC 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,846,872
Number of Sequences: 37544
Number of extensions: 62005
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)