Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D05
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    27   1.4  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    27   1.4  
Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    25   9.8  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    25   9.8  
AC084153-16|AAK84590.1|  233|Caenorhabditis elegans Hypothetical...    25   9.8  

>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFYRNTL 53
           ++ +T +VDP+  HF++  ++  +++ W   F  + + +    +TL
Sbjct: 634 SEAQTLEVDPKLAHFVSITINVADKNDWIPNFESASYEFDVKEDTL 679


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFYRNTL 53
           ++ +T +VDP+  HF++  ++  +++ W   F  + + +    +TL
Sbjct: 778 SEAQTLEVDPKLAHFVSITINVADKNDWIPNFESASYEFDVKEDTL 823


>Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical
           protein F14B6.4 protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 154 HHFLATNVDTKNQHLWKSMFNLSKFCYYFYR 62
           HH L T+ DT+    W +  N  +F  YFYR
Sbjct: 307 HHSL-TDEDTRGVLAWHTGKNDQQFLDYFYR 336


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFY 65
           TK+E   ++  + H  A  V+T+NQ L     N +  C Y Y
Sbjct: 840 TKKEIAVIEELSIHNRAMIVETENQELEVRERNDTGDCAYLY 881


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFY 65
           TK+E   ++  + H  A  V+T+NQ L     N +  C Y Y
Sbjct: 840 TKKEIAVIEELSIHNRAMIVETENQELEVRERNDTGDCAYLY 881


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 ISSKKMVGSRVYVGGLPFGVRE 199
           IS++ +   +V++GGLP  V E
Sbjct: 237 ISAEPLYSRKVFIGGLPIDVSE 258


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFY 65
           TK+E   ++  + H  A  V+T+NQ L     N +  C Y Y
Sbjct: 840 TKKEIAVIEELSIHNRAMIVETENQELEVRERNDTGDCAYLY 881


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 190 TKRETTDVDPRAHHFLATNVDTKNQHLWKSMFNLSKFCYYFY 65
           TK+E   ++  + H  A  V+T+NQ L     N +  C Y Y
Sbjct: 840 TKKEIAVIEELSIHNRAMIVETENQELEVRERNDTGDCAYLY 881


>AC084153-16|AAK84590.1|  233|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.16 protein.
          Length = 233

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 179 DHRRRPESPPFSCY*CRH*ESTLMEINVQFIK 84
           D  R P++P F+C  CR    ++ E+    IK
Sbjct: 45  DRSRTPKAPQFNCRQCRKAFDSIRELAEHEIK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,188,849
Number of Sequences: 27780
Number of extensions: 57893
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)