Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_D03
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    28   0.40 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   1.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   3.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   5.0  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    24   6.6  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    24   6.6  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    23   8.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    23   8.7  

>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 207 FTLNNGVEMPAIGLDTFKMGHFYT---VCA 287
           FTL NG ++P+IGL T++ G   T   VCA
Sbjct: 15  FTLPNGDKIPSIGLGTWRSGKDETKNAVCA 44


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 196 CHNNSHSTMEWKCLPLDWIHLKWDIFTQ 279
           CH++  STM W    L W   K  IF+Q
Sbjct: 313 CHDSIVSTMHWASTELLWSCSKDGIFSQ 340


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 226 WKCLPLDWIHLKW 264
           W  +P DW++++W
Sbjct: 472 WMQIPCDWVYIQW 484


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 194 YVFEIFKVFQPLQVPH 147
           ++F+I+KVF+   VPH
Sbjct: 589 FLFKIYKVFEVFVVPH 604


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 96  INYKKVNTELTNSPFKLLTAITD 28
           +N  K+ +ELT+  FK L  +TD
Sbjct: 306 LNVGKIPSELTSQDFKELAKMTD 328


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 241 LDWIHLKWDIFTQFVQTVD 297
           ++++H+ WD  TQF   +D
Sbjct: 119 IEYVHIHWDHDTQFALELD 137


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 DFEDFKYILPQQ----FTLNNGVEMPA 239
           +F+  K+I P       T+NNG++MPA
Sbjct: 42  NFKHIKWIFPNAPSIPVTVNNGMKMPA 68


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 259 LNVSNPMAGISTPLLSVNCCGNMY 188
           +NVS     +S PL++ NC  + Y
Sbjct: 151 VNVSAACNNVSAPLIANNCAPSFY 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,760
Number of Sequences: 5004
Number of extensions: 25364
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)